Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04769 ATGGCAAGTAATGAGCCTAAGTTCCCACCTCAGAGCCAGAAAACTCAACCAGGAAAAGAACATCTAATGGAACCACTACCACAAAGCATAAATCCTCACCACAAACCCACCAATAAGCTAAGCGGAAAGGTGGCGTTGGTGACAGGAGGTGACTCAGGTATTGGAAGAGCCGTGTCTCTGATATTTGCAAAAGAAGGTGCAACAGTGGCCTTTACATACGTGAAGGGTCATGAGGAAATTGACAAGGATGAAACATTGAAGTTGTTGCTAGAAGCAAAGACAAGTGATGCAAAAGATCCATTGGCAATTGCTGCTGATATTGGATATGATGATAATTGCAAACAAGTGGTTGATCTTGTTGTCAAAGAATATGGACACATTGATATTCTTGTCAACAATGCAGCTGAACAGCATCTTAAAAACTCAGTTGAGGAAATCACTGAGGAACAGCTTGAAAGAGTCTTCAGAACCAACATCTTTTCAAACTTCTTCTTGGTCAGGCATGCTTTGAAGTACATGAAAGAAGGAAGTTCAATCATAAACTCAACTTCAGTGAATGCTTATATTGGAAAAGCAGAAACACTGGACTACACTTCGACGAAGGGAGCCATTGTTGCATTCACTAGAGGTCTTGCTCAGCAGCTGGTGAAGAAAGGAATAAGAGTGAATGCTGTTGCTCCAGGTCCAGTTTGGACGCCGATTCAACCCGCTACCATGCCTGATGAGATGATACAGAATTTGGGGTCTGAAGTGCCAATGAAACGAGCAGCTCAGCCTAGTGAGATTGCACCTTGTTATTTGTTCTTGGCTTCTCTTCAAGACTCTTCATACTATACTGGCCAAGTTCTCCATCCAAATGGTGGGTTGATTGTGAATGCTTAA 882 0.4252 MASNEPKFPPQSQKTQPGKEHLMEPLPQSINPHHKPTNKLSGKVALVTGGDSGIGRAVSLIFAKEGATVAFTYVKGHEEIDKDETLKLLLEAKTSDAKDPLAIAADIGYDDNCKQVVDLVVKEYGHIDILVNNAAEQHLKNSVEEITEEQLERVFRTNIFSNFFLVRHALKYMKEGSSIINSTSVNAYIGKAETLDYTSTKGAIVAFTRGLAQQLVKKGIRVNAVAPGPVWTPIQPATMPDEMIQNLGSEVPMKRAAQPSEIAPCYLFLASLQDSSYYTGQVLHPNGGLIVNA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Vifa4g04769 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Vifa4g04769 293 Coils Coil 132 152 - -
Vifa4g04769 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 16 288 - -
Vifa4g04769 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 289 - -
Vifa4g04769 293 FunFam Short-chain dehydrogenase reductase 30 293 - -
Vifa4g04769 293 CDD SDR_c1 17 292 - -
Vifa4g04769 293 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g04769 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vifa4g04769 293 Gene3D - 2 289 - -
Vifa4g04769 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Vifa4g04769 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vifa4g04769 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vifa4g04769 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 290 IPR036291 -
Vifa4g04769 293 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04769 Vifa-Chr4 1503419362 1503420563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04769 38 289 Miscellaneous Gene Families AT4G05530 30.830 8.37e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04769 - - ahf:112763379 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04769 4 1503419362 1503420563 Vifa4g04769 4 1503419362 1503420563 ECH