Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04232 ATGGACGATGCCGGAGTTTCAAAAATAACTGCGAAACTGAAGGAAATATTTCAGAAGTGGCAAACGGGTTCTAAAGAGTGCAATGATGAACATTCTGGTGTGAATAATGTGGGAATATCGCCGATGATTAAGAAGAGGCTAAACAGTTTGATGTATTGTGATTCTGATGAAGATAGCTGCAATAGTCCTAAAGGACCAGATGATGTTCCAAAAGGGTACTTGGCTGTGTATGTTGGCCCTGAGCTTAGGAGGTTTATCATTCCAACAAGCTACCTTGGTCATTCTCTTTTCAAGATGTTGTTGGAAAAAGCTGCTGATGAATTTGGTTTTGATCAGAGTGGTGGACTTACTATTCCTTGTGAAATTGAGACCTTTAAATATCTTCTTAATTGCATGGAGAATACTCAGCTTCAAGATCATGATAACTCATCTGGAAACACATGA 444 0.3896 MDDAGVSKITAKLKEIFQKWQTGSKECNDEHSGVNNVGISPMIKKRLNSLMYCDSDEDSCNSPKGPDDVPKGYLAVYVGPELRRFIIPTSYLGHSLFKMLLEKAADEFGFDQSGGLTIPCEIETFKYLLNCMENTQLQDHDNSSGNT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04232 147 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 51 128 IPR003676 GO:0009733
Vifa4g04232 147 Pfam Auxin responsive protein 55 131 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04232 Vifa-Chr4 1348744849 1348745751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04232 1 143 Calmodulin-binding Proteins AT5G20810 61.935 4.93e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04232 K14488 - gmx:100795275 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04232 4 1348744849 1348745751 Vifa4g04232 4 1348744849 1348745751 ECH
Vifa4g04232 4 1348744849 1348745751 Vifa1g08564 1 1349959692 1349960487 PCT