Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08564 ATGGAGTACGGTGGAGGCTCGAAACTAACCGGAATTAGGCAGATTGTGAGACTAAAAGAAATACTTCAGAAGTGGCAAAGTGTCACAATACGCGCAAAAACTGCCCGCCTAAAAATTGAAGAAAGTAATGGTAGCAGCAAATCTCCAATAATCAACAAAAGAATAACAGATATCATATGTTGTGACTCTGATGAGGAAAGCTGCAAAAGTCCAGAACCACCACCTGATGTGCCAAAAGGTTACTTGGCAGTCTACGTTGGGCCCGAGCTTCGACGGTTCATTATTCCAACTAGCTACCTTAGCCACTCCCTATTCAAATTGTTGCTTGAAAAGGCTGCTGAGGAATTCGGATTTGATCATAGCGGCGGGCTCACGATACCGTGTGAGATTGAGACCTTTAAATATCTACTCAAATGCATTGAGGCCCAGGAGAAAGAAGAACAACATGATGACAGCTTGTCTGGAAACTCAGAATCCGAAGAAATCTTTGAAGAGTAA 498 0.4297 MEYGGGSKLTGIRQIVRLKEILQKWQSVTIRAKTARLKIEESNGSSKSPIINKRITDIICCDSDEESCKSPEPPPDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKLLLEKAAEEFGFDHSGGLTIPCEIETFKYLLKCIEAQEKEEQHDDSLSGNSESEEIFEE 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08564 165 MobiDBLite consensus disorder prediction 146 165 - -
Vifa1g08564 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 136 IPR003676 GO:0009733
Vifa1g08564 165 Pfam Auxin responsive protein 53 140 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08564 Vifa-Chr1 1349959692 1349960487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08564 1 161 Calmodulin-binding Proteins AT3G43120 66.258 1.05e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08564 K14488 - cpap:110808074 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08564 1 1349959692 1349960487 Vifa1g08564 1 1349959692 1349960487 ECH
Vifa4g04232 4 1348744849 1348745751 Vifa1g08564 1 1349959692 1349960487 PCT