Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04069 ATGAACCACAACCGTCGAAGTCCCGGCGGTTTCCGCTCCGTCCCTGCCCCTCTCCATCGGAATTTTGATAGTCCACAGCGTTGGTCTCCGGGTAGGGTTGGGGGATTTCGTCCACCAGGTGGTGGAGAGGGGTTTAGGCCGATGGGAGGTGAAGGTGCTGGAGATTTTGGATTTAATAATCACCAGCCGGCGCCGGCGCCGATGTCTGGACAGAAACGAGGGTTTCCTTTCTCTGGACGCGGAGGTTCGCCAGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCTCGAACAGCAACTGAGGAAGATATCTGTCCTTTATTTGAGGAACACGGGAATGTGGTTGAGGTCGCCCTGATCAAAGATAGAAAGACAGGACAGCGTCAAGGAGCCAAGACATCTTCACCTGTAAGCTGCTCTTTGTAG 441 0.5238 MNHNRRSPGGFRSVPAPLHRNFDSPQRWSPGRVGGFRPPGGGEGFRPMGGEGAGDFGFNNHQPAPAPMSGQKRGFPFSGRGGSPDHFDGGNFAKLFVGSVPRTATEEDICPLFEEHGNVVEVALIKDRKTGQRQGAKTSSPVSCSL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04069 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 135 IPR000504 GO:0003723
Vifa4g04069 146 SUPERFAMILY RNA-binding domain, RBD 56 135 IPR035979 GO:0003676
Vifa4g04069 146 Gene3D - 91 136 IPR012677 -
Vifa4g04069 146 MobiDBLite consensus disorder prediction 1 86 - -
Vifa4g04069 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04069 Vifa-Chr4 1298475841 1298478174 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04069 - - tpra:123920645 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04069 4 1298475841 1298478174 Vifa4g04069 4 1298475841 1298478174 ECH