Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04062 ATGTGTCCATCTGGCCGTAACCTCCGTCTACAATCTCCAACATCCGATTTCCGCCCGGCATTCGACGTTCTCGACACCGATTGCGATGGTAAAATAAGCCGCGAGGATCTCCGTTCATTCTACGCCACCAACAGCGGCGTCGGAGTTAGCGGCGGCGATGACGCAATCGGCGTGATGATGTCGGTGGCGGACACGAACATGAGCGGGTTCGTGGAGTACGAGGAATTCGAGAAGGTTGTTAGCGGTAGCGATGAAAAGAGACCGGTAGGGTGTGGAGCCATGGAAGATGTGTTCAAGGTGATGGACAGAGACGGTGACGGTAAAGTTGGTTATCAAGATTTGAAGAACTATATGGCTTTGGCTGGGTTTGAGGCAAGCGATGAAGATATTAACGCTATGATTAGATTTGGCGGTGGTGATGTTAACGGCGGCGTTAGCTTCGATGCTATTAGGGTAAACTGGAACAAGCATTTACATGGTAATCCCATGTATGTTCTGTGGATGAAGCTTAGGAGGTTAAAGCCAGTGCTGAAGGGTCTTAGCATCCCTCTCCATGAAAGAGGATGGCACTATTGTGATTTCTAA 585 0.4957 MCPSGRNLRLQSPTSDFRPAFDVLDTDCDGKISREDLRSFYATNSGVGVSGGDDAIGVMMSVADTNMSGFVEYEEFEKVVSGSDEKRPVGCGAMEDVFKVMDRDGDGKVGYQDLKNYMALAGFEASDEDINAMIRFGGGDVNGGVSFDAIRVNWNKHLHGNPMYVLWMKLRRLKPVLKGLSIPLHERGWHYCDF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04062 194 Gene3D - 6 159 - -
Vifa4g04062 194 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Vifa4g04062 194 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Vifa4g04062 194 ProSiteProfiles EF-hand calcium-binding domain profile. 94 124 IPR002048 GO:0005509
Vifa4g04062 194 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Vifa4g04062 194 FunFam Calmodulin-2 A 7 154 - -
Vifa4g04062 194 SUPERFAMILY EF-hand 15 156 IPR011992 -
Vifa4g04062 194 PANTHER CALCIUM BINDING PROTEIN 15 79 - -
Vifa4g04062 194 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Vifa4g04062 194 Pfam EF-hand domain pair 17 80 IPR002048 GO:0005509
Vifa4g04062 194 Pfam EF hand 95 119 IPR002048 GO:0005509
Vifa4g04062 194 CDD EFh 95 148 IPR002048 GO:0005509
Vifa4g04062 194 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Vifa4g04062 194 SMART efh_1 93 121 IPR002048 GO:0005509
Vifa4g04062 194 SMART efh_1 16 44 IPR002048 GO:0005509
Vifa4g04062 194 SMART efh_1 55 83 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04062 1 150 EF-hand Containing Proteins AT5G49480 50.943 1.24e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04062 K02183 - gmx:100527230 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04062 4 1295438297 1295439740 Vifa4g04062 4 1295438297 1295439740 ECH