Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04028 ATGCAATCCTCTCTCTCCCTCACTTTCTCTCCCACCACCTCCGCCGCCACAATCTCCAGATCACACCACTCTCTCCCACTCTCCACTGCCAAACCTATAAACCTCCGTTTATGCGGCTTGAGACGCGAGGCCTTGGGTTTAGGGTTTTCATCTTCCCTTAACCGTAATCTCCGCCGTCAATACTCCGCTATAGTATCCGCTGCGCGTTCCGACAATGGCAGCAGCACTTCTGGATCCTTCGATTATGATTTGTTGATTATCGGTGCTGGTGTTGGTGGTCACGGTGCCGCGCTTCACGCCGTCGAGAAGGGATTGAAAACAGCTATAGTGGAGGGAGACGTTGTGGGAGGGACATGTGTGAACAGAGGATGTGTTCCTTCGAAAGCTCTTTTGGCTGCTAGTGGTCGAATGCGGGAGCTAAGGAGTGATCATCATTTGAAGTCATTGGGCTTACATGTTTCTTCTGCTGGGTATGACAGACAAGGAGTGGCTGATCATGCTAATAATCTTGCTTCCAAAATCCGTAATAATTTGACAAGCTCCCTTAAAGCGATAGGAGTTGACATACTTACTGGTTTTGGTACTATATTGGGTCCTCAAAAGGTGCAAATTGGCTCTTCAAACAACGTAGTAACTGCAAAAAATATCATCATTGCCACTGGGTCGGTTCCTTTTGTCCCTAAGGGTGTTGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGACTGGATAGCAATTGTAGGAAGTGGATATATTGGCCTTGAATTCAGTGATGTATATACGGCACTTGGAAGTGAGGTTACTTTTGTTGAAGCTTTAGACCAGCTTATGCCTGGATTTGATCCTGAAATCAGTAAGCTGGCTCAAAGGGTTCTTATAAATCCCCGTAATATTGACTATCACACTGGAGTTTTTGCATCCAAGATTACGCCTGCAAGGGATGGAAAACCCGTCTTGATTGAACTTATTGATGCAAAAACTAAGGAACCTAAGGACACTTTGGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATCCACAGAAGGTCTAGGACTGGAGAATGTTGATGTGGCAACACAGCGAGGTTTTATTCCCGTGGACGAGCGCATGCGTGTAATTGATGCAAATGGAAAGCTGGTGCCTCATTTATACTGTATTGGTGACGCAAATGGAAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACGGGAAGAGATCACGTGCTCAATCATTTAAGTATTCCAGCTGCATGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAAGAGGGGTTTGAAGTGAGTGTTGCTAAAACAAGTTTTAAAGCTAACACAAAAGCCCTAGCAGAAAATGAAGGGGAGGGACTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATCCTAGGGGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATTCATGAAGCTTCCAATGCTATAGCATTAGGAACACGTATTCAGGACATTAAATTGGCAGTTCATGCACATCCAACTCTATCTGAGGTTCTTGATGAGCTATTTAAATCCGCAAAGGTTAAAGAACACACATCTATCCCAGTAAGTGAACCAGTTGCCGTCTAA 1698 0.4517 MQSSLSLTFSPTTSAATISRSHHSLPLSTAKPINLRLCGLRREALGLGFSSSLNRNLRRQYSAIVSAARSDNGSSTSGSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAASGRMRELRSDHHLKSLGLHVSSAGYDRQGVADHANNLASKIRNNLTSSLKAIGVDILTGFGTILGPQKVQIGSSNNVVTAKNIIIATGSVPFVPKGVEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPSTEGLGLENVDVATQRGFIPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKSAKVKEHTSIPVSEPVAV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04028 565 Gene3D - 225 352 IPR036188 -
Vifa4g04028 565 FunFam Dihydrolipoyl dehydrogenase 432 557 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 498 513 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 394 401 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 346 360 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 115 130 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 216 225 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 429 450 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 277 - -
Vifa4g04028 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 520 540 - -
Vifa4g04028 565 Gene3D - 432 556 IPR016156 GO:0016491|GO:0050660
Vifa4g04028 565 Gene3D - 82 415 IPR036188 -
Vifa4g04028 565 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 432 546 IPR016156 GO:0016491|GO:0050660
Vifa4g04028 565 SUPERFAMILY FAD/NAD(P)-binding domain 72 423 IPR036188 -
Vifa4g04028 565 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 433 544 IPR004099 -
Vifa4g04028 565 PANTHER DISULFIDE OXIDOREDUCTASE 79 548 - -
Vifa4g04028 565 NCBIfam dihydrolipoyl dehydrogenase 82 551 IPR006258 GO:0004148|GO:0050660
Vifa4g04028 565 PIRSF Hg-II_reductase_MerA 42 548 IPR001100 GO:0016491
Vifa4g04028 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 379 401 - -
Vifa4g04028 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 84 103 - -
Vifa4g04028 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 252 270 - -
Vifa4g04028 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 345 361 - -
Vifa4g04028 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 213 231 - -
Vifa4g04028 565 Pfam Pyridine nucleotide-disulphide oxidoreductase 82 414 IPR023753 GO:0016491
Vifa4g04028 565 FunFam Putative dihydrolipoyl dehydrogenase 225 352 - -
Vifa4g04028 565 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 116 126 IPR012999 GO:0016668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04028 Vifa-Chr4 1287294998 1287301897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04028 1 556 Acyl Lipid Metabolism Gene Families AT3G16950 82.301 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04028 K00382 - gmx:100782004 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04028 4 1287294998 1287301897 Vifa4g04028 4 1287294998 1287301897 ECH