Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04026 ATGTTTCTGTTTGATTGGTTCTATGGAATTCTTGCTACGCTTGGTTTGTGGCAAAAAGAGGCGAAGATTTTGTTTCTAGGGTTAGATAATGCTGGGAAAACGACGTTGCTTCACATGCTTAAAGACGAGAGGTTAGCACAGCATCAACCAACTCAACATCCAACGTCGGAGGAATTGAGTATTGGGAAGATAAAGTTTAAAGCTTTTGATTTGGGTGGGCACCAGATTGCTCGTAGGGTTTGGAGTGATTATTATGCTCAGGTGGATGCTGTAATCTATCTGGTTGATGCATATGACAAGGAAAGGTTTCCGGAATCAAAGAAGGAGCTGAATGCTCTTCTTTCTGATGGCTCACTTGCTGATGTACCATTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCCTCAGAGGACGAGTTACGTTATAATCTCGGCCTCACAAACTTCACCACAGGCAAGGGCAAGGTTAATCTTTCTGGCTCCAATGTCCGACCTATGGAGGTATTCATGTGTAGTATTGTCCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTACATCAAATAG 582 0.4296 MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLAQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWSDYYAQVDAVIYLVDAYDKERFPESKKELNALLSDGSLADVPFLILGNKIDIPYAASEDELRYNLGLTNFTTGKGKVNLSGSNVRPMEVFMCSIVRKMGYGEGFQWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04026 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 CDD Sar1 2 192 - -
Vifa4g04026 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Vifa4g04026 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Vifa4g04026 193 SMART arf_sub_2 3 193 - -
Vifa4g04026 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Vifa4g04026 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Vifa4g04026 193 NCBIfam small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Vifa4g04026 193 FunFam GTP-binding protein SAR1A 1 193 - -
Vifa4g04026 193 Gene3D - 1 193 IPR027417 -
Vifa4g04026 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Vifa4g04026 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04026 Vifa-Chr4 1286432196 1286433197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04026 K07953 - csv:101206151 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04026 4 1286432196 1286433197 Vifa4g04026 4 1286432196 1286433197 ECH