Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04023 ATGGTTGCGAAACATGATATAGATGATTTACCGAAGAACACGGCCAACTACACCGCTTTAACGCCGTTATGGTTCCTACAGCGAGCAGCTCAAGTTCACCCAACCAGAAAATCAGTTATCCACGGATCCCGTCATTACACGTGGCACCACACTTACCAACGTTGCCGTCGATTCGCCTCCGCTCTTTCCAAACTCTCCGTCGGCCCCGGAAACACTGTAGCTGTTATTGCGCCGAATATTCCGGCTCTCTATGAAGCTCATTTTGGGATTCCGATGGCGGGGGCGGTGTTAAACCCGGTGAATATAAGGCTAAATGCAGCCACTATTGCTTTTCTTCTTGGTCATTGTACTGCGTCGGTTATAATTGTGGATCAAGAGTACTTTTTGTTGGCGGAAGAAGCTTTGAAAATATGGTCTGAGAAATCTGAAACGTTCAAGTCTCCGATTTTGATTGTCATTGGAGATGAAAACTGCGAGCCTGAGTCGCTTAGATATGCGTTGAGCAAAGGAGTTGTTGAGTATGAGGATTTTCTTCAAAGTGGTGACCCGGAATATGATTGGAAACCACCCGAGGATGAGTGGCAGAGCATTGCTTTGGGTTACACGTCTGGGACAACGGCTAGTCCTAAAGGCGTGGTTTTGCATCACCGTGGAGCGTATCTGATGGCTCTTAGTGGTGCACTTATTTGGGGAATGAATGAAGGAGCTGTATATCTTTGGACTCTACCCATGTTTCATTGCAATGGCTGGTGCTACACTTGGACTCTTCCGGCTATCTTTGGCACAAACATATGCCTCCGCCAGGTATCTGCAAAGGCAGTATATGAAGCCATTGCCAAGTACAAAGTGACTCATTTTTGTGCAGCACCAGTGGTGCTTAACTCAATTGTTAATGCTCCAGCTGAGGAAACTATACTTCCTCTACCTCATGTTGTACATGTGAATACTGCCGGCGCTGCTCCTCCTCCTTCTGTTCTTTCCGGAATGACTGAATTAGGATTTCGCGTCACGCACACTTATGGTCTTTCAGAAACCTATGGGCCGTCCGTCTATTGTGCCTGGAAACCAGAGTGGGACTCACTTCCCCGGGAATCCCAAGCCCGGCTCCATTCAAGACAAGGGGTTAGGTACATTGCCTTGGAAGGCCTGGATGTCGTCAACACTAAAACCATGCAACCTGTTCCCGCAGATGGTAAAACTGTTGGTGAGATCGTGATGCGTGGAAATGCTGTGATGAAAGGGTACTTAAAGAATCCAAAAGCTAATGAAGAAAGCTTTGCAAATGGATGGTATCATTCCGGTGATCTTGCTGTAAAGCACCCAGATGGATATATAGAAATTAAAGACAGATCAAAGGACATCATCATCTCGGGCGCTGAAAATATCAGCAGTGTAGAGGTGGAGAATGCTCTTTACTCGCATCCTGCAATCCTGGAGACATCCGTGGTTGCAAGGCCAGACGAGAAATGGGGCGAGTCTCCATGTGCATTTGTTACATTGAAGCCTGGAGTGGATCGTAGTAACGAGCAGCGTCTAGTTGAGGATATACTGAATTTCTGCAGGTCAAAGATACCTGCTTATTGGGTCCCAAAATCAGTTGTATTCGGACCGTTACCCAAGACAGCTACCGGGAAGGTTCAGAAGCACGTGCTTAGGGCCAAGGCAAAAGAAATGGGGCCTATCAAGAATAAGATTAGCAAGTTGTAA 1707 0.4692 MVAKHDIDDLPKNTANYTALTPLWFLQRAAQVHPTRKSVIHGSRHYTWHHTYQRCRRFASALSKLSVGPGNTVAVIAPNIPALYEAHFGIPMAGAVLNPVNIRLNAATIAFLLGHCTASVIIVDQEYFLLAEEALKIWSEKSETFKSPILIVIGDENCEPESLRYALSKGVVEYEDFLQSGDPEYDWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSGALIWGMNEGAVYLWTLPMFHCNGWCYTWTLPAIFGTNICLRQVSAKAVYEAIAKYKVTHFCAAPVVLNSIVNAPAEETILPLPHVVHVNTAGAAPPPSVLSGMTELGFRVTHTYGLSETYGPSVYCAWKPEWDSLPRESQARLHSRQGVRYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYSHPAILETSVVARPDEKWGESPCAFVTLKPGVDRSNEQRLVEDILNFCRSKIPAYWVPKSVVFGPLPKTATGKVQKHVLRAKAKEMGPIKNKISKL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04023 568 Gene3D - 6 452 IPR042099 -
Vifa4g04023 568 Pfam AMP-binding enzyme C-terminal domain 466 545 IPR025110 -
Vifa4g04023 568 Gene3D - 453 560 IPR045851 -
Vifa4g04023 568 FunFam 2,3-dihydroxybenzoate-AMP ligase 452 559 - -
Vifa4g04023 568 CDD ttLC_FACS_AEE21_like 17 553 - -
Vifa4g04023 568 PANTHER ACYL-ACTIVATING ENZYME 11 562 - -
Vifa4g04023 568 FunFam Long-chain-fatty-acid--CoA ligase FadD 7 452 - -
Vifa4g04023 568 SUPERFAMILY Acetyl-CoA synthetase-like 12 557 - -
Vifa4g04023 568 Pfam AMP-binding enzyme 26 457 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04023 Vifa-Chr4 1285745258 1285747595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04023 6 561 Miscellaneous Gene Families AT3G16910 75.583 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04023 K01913 - gmx:100808187 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04023 4 1285745258 1285747595 Vifa4g04023 4 1285745258 1285747595 ECH