Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03965 ATGGCTATCATAACAACCTTCACCGGCAAACGCCCTCACCGGTGGCTTAACCCCAACCGTTCGTCTCCGAGTTCTTCCGAATTCAAAAGACAGAAAGTATCAACCATGTCCCACAAAAAACCACCACCATTACCCACCGCCACAACCAATGCCACTGTTTCCAGAATTTCTCGTTACCCTGAAACTAAACCACCTCTGCATAGAGAAGTTCACGCGCCGTGTAGTAGACCGCGCAAATTCGATTTATCTATCAATTCCAAACCAGAATCGTCAAAGTTGCTGGTTAGTGGTATCAACCACTCGTTATTTGAAAATTACCAGCGTGAGAAATGTTCTGCAATGGCCACCATCCCGTTAGAGCCAAAGGGAAAAGAAAAGGATAATCATAAAGAGGTTGTTTCGGAAGATTCAAATGTTGAAGATGTACTGCCTGTGGAGAATTATTTGGTTTGTTTGGATACTGAGGTTGAGGCAGTGAATGGAAGCGTTCAGAAACAGTCAACTTCATCTGTGGTTTCTGAGTTGAGTAATGATAAATTGAAAGTGGTTGATGATGCTGCAAAGATTTTGGATACTTTGTCTTTGGATCCGGAGAAGGATGTTTCTAGTGTTGGTGCTTACAAGAAGTTGCTCCAGGCTGTTGATAAGAGAACAGATACAATTGGTAGGTTGAAATTTGAAATTCAGCTTAATGAGAAGCGCAGGTCGGCGTCGCGTCCAAAGAAAGATCTAGTGGAGGAAGTGCCGCCGGAACCTTTTGTTCCTCTTACAAAAGAGGAACAAGTTGAGGTTGCACGAGCATTTTCTGCTAACAGGAAGAAGATATTGGTTGCTCATGAGAATTCCAATATTGAAATATCGGGTGAAAAGTTTCAGTGTCTGAGGCCAAGTGGATGGTTAAACGATGAGGTGATAAATTTGTACCTTGAGTTACTGAAAGAGAGGGAGAGAAGAGAGCCACAAAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTATAAGAAGTTAATAAGTGGCAAGAATTGTTATGATTACAAATCTGTGAAGAGATGGACTACTCAGAAGAAATTGGGATATGGTCTACATGAATGTGATAAAATATTTGTACCTATTCACCAGAATATCCATTGGTGCCTAGGTGTTATCAATAATAAGGAAAAGAAGTTTCAGTATCTTGATTCACTGAAAGGAATTGATACCCAAGTGCTGGAAGTGCTGGCAAGATATTTTGTAGATGAAGTAAAGGACAAGACTGGAGAAGATATTGACATAAGTTATTGGGAAAAAGAATTTGTTGAAGAGCTTCCTGAACAGAAGAACGGGTCTGATTGCGGGGTATATATGGTCAAATATGCTGATTTTTATAGCAGAAACTTGAGGCTGTGTTTCAATCAGGAACATATGCCTTATTTCAGGCTTAAAACAGCTAAGGAAATTTTGAAATTGAAAGCTGAATAA 1461 0.3997 MAIITTFTGKRPHRWLNPNRSSPSSSEFKRQKVSTMSHKKPPPLPTATTNATVSRISRYPETKPPLHREVHAPCSRPRKFDLSINSKPESSKLLVSGINHSLFENYQREKCSAMATIPLEPKGKEKDNHKEVVSEDSNVEDVLPVENYLVCLDTEVEAVNGSVQKQSTSSVVSELSNDKLKVVDDAAKILDTLSLDPEKDVSSVGAYKKLLQAVDKRTDTIGRLKFEIQLNEKRRSASRPKKDLVEEVPPEPFVPLTKEEQVEVARAFSANRKKILVAHENSNIEISGEKFQCLRPSGWLNDEVINLYLELLKERERREPQKFLNCHFFNTFFYKKLISGKNCYDYKSVKRWTTQKKLGYGLHECDKIFVPIHQNIHWCLGVINNKEKKFQYLDSLKGIDTQVLEVLARYFVDEVKDKTGEDIDISYWEKEFVEELPEQKNGSDCGVYMVKYADFYSRNLRLCFNQEHMPYFRLKTAKEILKLKAE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03965 486 Pfam Ulp1 protease family, C-terminal catalytic domain 299 480 IPR003653 GO:0006508|GO:0008234
Vifa4g03965 486 SUPERFAMILY Cysteine proteinases 252 484 IPR038765 -
Vifa4g03965 486 MobiDBLite consensus disorder prediction 15 31 - -
Vifa4g03965 486 FunFam Ubiquitin-like-specific protease ESD4 243 484 - -
Vifa4g03965 486 Gene3D Adenoviral Proteinase; Chain A 244 484 - -
Vifa4g03965 486 ProSiteProfiles Ubiquitin-like protease family profile. 284 456 IPR003653 GO:0006508|GO:0008234
Vifa4g03965 486 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 87 479 - -
Vifa4g03965 486 Coils Coil 478 486 - -
Vifa4g03965 486 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03965 Vifa-Chr4 1269139258 1269145062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03965 K08592 - gmx:100797013 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03965 4 1269139258 1269145062 Vifa4g03965 4 1269139258 1269145062 ECH
Vifa4g03965 4 1269139258 1269145062 Vifa1g09336 1 1474733068 1474737998 PCT