Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03526 ATGTTCTCAGCTCTAAACTTGCCACAACGCATTCCGGAATCTCTCTCCGACGCTCTCACCGCCGTTAACAGGGTTTTTGACTATTTCATGGTTACCGGAGCATTCAAAATGGATGCTGATAACAGTTTTCACAAGCAAGCTGCTCAAGTGTTTAACGGACGAGGCGAGAGTTCGCGGTCCGATGCCAGCGAGGCACAGCCTAATGCCAAAAGGGTCAAGGTGGAGAAGGAACTAACTTTTAAGGACATGTATGAAAACAAGGAGTTGTTCGAGGAGGATGACGAGGAGGACACTGATTGGGAACCATGTCCGGTGGAGAAATGTGTTGAAGTCATCAAGTGGTTCTGTAGAAACTGTACTATGGATAACCTAGACAACGATATCTGCTGCGAAGTATGCGGGGAGCATAAAGATTCTAAAATTCTAACCCTGGGGCATTTTGCATCGCCCTTTGCACAAGATGGAAATCTGAATGAGATCCAGCCAAGTATGAAAGTAATGAGAGATTTTGACTCCCAAGAATCAGCTGCAAACAGTTCTACGGCAATTGGCTTTGATGAAAGAATGTTGTTACATGCAGAAGTTGAAAAGAAATCACATCCACACCCTGAAAGGCCAGATCGACTTCGAGCAATTGTTGCTAGTCTTACAAGAGCTGGTATATTTCCAGGAAGATGCTATCCAATTCCTGCTAGAGAAATCACTCAAGAAGAACTTATGATGGTTCATTCTTTGGAGCATATTGAATCTGTGGAAGTTACAAGCAAGTTAATGTCTAGTTATTTCACTTCCGACACATACGCCAACAAGCATTCAGCATGTGCTGCTAGGCTTGCAGCTGGGTTATGTGCTGATCTGGCATCGGCAATTGTTTCTGGGCGTGTCAAAAACGGATTTGCTTTGGTTAGACCTCCTGGTCATCATGCCGGTGTAAAAGATGTGATGGGGTTTTGTCTTCACAATAATGCTGCGGTGGCAGCATTGGCAGCTCAGGCTGCAGGGGCTAAGAAAGTGCTAATTTTAGATTGGGATGTTCATCACGGAAATGGCACACAGGAAATATTTGAGAAAAACAAATCAGTCTTGTATATTTCATTGCATAGACATGAGGGCGGAGCATTTTATCCTGGTACTGGTGGTGCTCATGAGGTTGGTTACATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGTGGTGTTAGTGATAATGATTACAATTTTGCATTTCAGCATGTTGTACTTCCTATAGCTTCTGAGTTTGCTCCAGATTTTACCATAATATCAGCAGGATTTGATGCTGCCAGAGGTGATCCCCTAGGAGGTTGTGATATTACTCCCTCTGGCTATGCACAGATGACACACATGTTGAATGCCCTATCTGGTGGAAAAATGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGAGAGTCATGTACCCGAACTGGAAAACAGTTTCCCTACCAAATCTGGCCTGCAGACTGTTTTCGAAGTCCTTGACATTCAGAATAATTTTTGGCCTTCCTTGAAACCTATCTTTGAAAATGTGATGTCACTTTGGGAAATGCACTGTCTTGGAAAAAAAGTTGTAGGCAAACAGACAAAAAAGAGACGCCGAATTTTGGTACCAAAATGGTGGAGAATTTGTGAAATATCAGCTTTAGAAGAAACCTCTCAGAATTTTCCGTTCTTAGAATGTGTTTGTTGTTTGCTTGTCAAGTGTAAGTTCATTCTTTTGGGAGAAGAAGATTTGAAAATGAAGGGACTACGCCCAAACCAGGGGTGGTCTCATATTCAATTCAATGAGTACTTGGGGTTTTTTTTGTACAAATAA 1887 0.4261 MFSALNLPQRIPESLSDALTAVNRVFDYFMVTGAFKMDADNSFHKQAAQVFNGRGESSRSDASEAQPNAKRVKVEKELTFKDMYENKELFEEDDEEDTDWEPCPVEKCVEVIKWFCRNCTMDNLDNDICCEVCGEHKDSKILTLGHFASPFAQDGNLNEIQPSMKVMRDFDSQESAANSSTAIGFDERMLLHAEVEKKSHPHPERPDRLRAIVASLTRAGIFPGRCYPIPAREITQEELMMVHSLEHIESVEVTSKLMSSYFTSDTYANKHSACAARLAAGLCADLASAIVSGRVKNGFALVRPPGHHAGVKDVMGFCLHNNAAVAALAAQAAGAKKVLILDWDVHHGNGTQEIFEKNKSVLYISLHRHEGGAFYPGTGGAHEVGYMGAEGYCVNIPWSRGGVSDNDYNFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGGCDITPSGYAQMTHMLNALSGGKMLVILEGGYNLRSISSSATAVIKVLLGESHVPELENSFPTKSGLQTVFEVLDIQNNFWPSLKPIFENVMSLWEMHCLGKKVVGKQTKKRRRILVPKWWRICEISALEETSQNFPFLECVCCLLVKCKFILLGEEDLKMKGLRPNQGWSHIQFNEYLGFFLYK 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03526 628 PANTHER HISTONE DEACETYLASE 9-RELATED 92 531 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vifa4g03526 628 Gene3D Histone deacetylase domain 174 543 IPR037138 -
Vifa4g03526 628 ProSitePatterns Zinc finger RanBP2-type signature. 114 133 IPR001876 -
Vifa4g03526 628 FunFam Histone deacetylase 15 174 543 - -
Vifa4g03526 628 Pfam Histone deacetylase domain 202 490 IPR023801 -
Vifa4g03526 628 SUPERFAMILY Arginase/deacetylase 178 525 IPR023696 -
Vifa4g03526 628 CDD HDAC_classII 202 492 - -
Vifa4g03526 628 PRINTS Histone deacetylase superfamily signature 304 327 IPR000286 -
Vifa4g03526 628 PRINTS Histone deacetylase superfamily signature 337 352 IPR000286 -
Vifa4g03526 628 PRINTS Histone deacetylase superfamily signature 425 435 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03526 Vifa-Chr4 1106004114 1106024966 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03526 - - psat:127073641 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03526 4 1106004114 1106024966 Vifa4g03526 4 1106004114 1106024966 ECH