Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03523 ATGGATGAAAATTTCGACGGCATTGATTACAAACTCCCCGAGCTCAAATTAGATTCTAAGCAAGCACAAGGGTTTCTATCCTTTTTCAAAACCCTATCTGATGACCCGAGGGCTATTAGATTTTTTGATCGTCGGGATTACTATACTGCTCATGGTGAGAATGCAACATTCATTGCTAAAACCTACTATCACACTACTACCGCTCTACGGCAGTTGGGTAGTGGATCAAATGCTCTTTCCAGTGTGAGTGTCAGTAGGAACATGTTTGAAACAATTGCCCGTGATCTACTCTTGGAGAGAACAGACCATACGCTTGAGGTCTACGAGGGCAGCGGTTCTAACTGGAGACTGGTCAAAAGTGGTACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAGGATTCTCCAGTTGTTGTTGCACTGTCACTTAACTCCCGTGAAAGTGGGTGCACCGTCGGATTAGGATTTGTCTCTCTAACTACGAGACTACTAGGGATGGCTGAATTCCTTGATGATAGTCACCTCACAAATGTAGAGTCAGTATTGGTTGCTCTTGGCTGCAAAGAGTGCCTTGTGCCAATTGAACGTGGAAAATCTGTTGAATATAAAATGTTGTGTGATGTGTTGGCTAAGTGTGGTGTGATGCTGACTGAGAGAAAGAAATCTGAATTCAAGACTAGAGATCTGGTACAGGATCTTGGCAGGCTTGTCAAAGGTTCTATTCAAGCGGTTCAAGATTTAGTTTCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGCACTGCTCTCTTATGCAGAGTTACTTGCAGATGAAAGCAATTATGGAAATTATACTCTGCGTCGGTACAATCTTGACAGTTACATGAGGTTAGATTCTGCAGCCATGAGGGCACTCAATGTCTTAGAAAGTAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGAACCTGTACAGCTGGAATGGGAAAACGGTTATTGCACATGTGGCTAAAGCAGCCATTATTAGATGTAAAAGAAATTAACTTGAGGTTGGATGTAGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGGTGCACAATCTTCAGAAGAGAAGAGCTGGTTTGCAACATGTTGTTAAACTTTATCAGTCAAGTATAAGATTGCCTTACATTAAAAGTGCCCTGGATAGGTATGATGGACAATTTTCTTCAATGATGAAGAACAGGTATTTGAAAGATTTAGAGTTATGGACTGGTGTTGACCGCCTAAATAAATTTATTGAGCTTGTAGAAACTGCTGTTGACCTTGATCATCTGGAGAACGGGGAATACATGATTTCTTCAAGTTATGACACTGCACTAACCGAACTTAAGGAGAAGCAAGAATTACTAGAGAGTCAAATACATAACTTGCATAAACAAACTGCTGATGATCTTGATCTGCAGATAGATAAGACATTAAAGTTAGATAAGGGCACACAATTTGGACACGTTTTTAGAATCACAAAGAAGGAAGAACCAAAAATAAGGAAGAAGCTCAACACCCAGTTTATTGTACTTGAAACCCGCAAAGATGGAGTGAAGTTTACTAACACAAAGCTCAAAAAATTGGGAGACAAATATCAACAAATTCTTGAAGAGTACAAGAGCTGTCAAAAACAGTTAGTTATTAAAGTAGTGGAAATTGCAGCAACCTTCTCTGAGGTGTTTGAATCCCTAGCTGCATTAATTTCTGAATTGGACGTGTTACTAAGCTTTGCTGATCTGGCTTCTAGTTGTCCTACTCCCTATACAAGGCCTGAAATCACCTCATCGGACGTAGGAGATATTATTTTAGAAGGTAGCAGACATCCTTGTGTGGAGGCACAAGACTGGGTTAATTTTATACCAAATGATTGTAAGCTTATCAGAGAAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATACATCCGACAGGTGGGCGTGAATATTTTGATGGCGCAAGTTGGTTGCTTTGTTCCATGTGACAAAGCCAGCATATCTGTTCGCGATTGCATTTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGCGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACCGAAAAGTCCTTGATAATCATTGACGAGTTGGGACGTGGGACATCTACTTACGATGGATTTGGTCTTGCTTGGGCCATTTGTGAGCACATAGTTGATGTGATAAAAGCCCCTACTTTATTTGCAACTCACTTTCATGAACTGACTGCATTAGCCCATGAGAATGGTAGCAATGATACACATAAACAGATTGTTGGTGTGGCAAATTATCATGTTAGTGCACATATTGATGCATCTACTCGCAAGCTAACTATGCTGTACAAGGTTGAACCAGGAGCTTGTGATCAGAGTTTTGGTATTCACATTTTTTCTCCTTCTGTGATATCCTTAATTGATTCTTCTACAGAGGAGGTGGGTTCTAAACGTAAGAGAGAATTTGAATCTGATGACATGTCTAAAGGGGCTGCAAAGGCTCGCCAAATTCTTGAAGCGTTTGTTGCTTTGCCACTTGAAACCATGGACAAAACGGAAGCTATGCAAGAAGTTAGGAAGTTGAAAGATAATTTAGAGAAGGATGCACAAAACTGTCTTTGGTTGCAAAAATTCTTGTAG 2763 0.4039 MDENFDGIDYKLPELKLDSKQAQGFLSFFKTLSDDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNSRESGCTVGLGFVSLTTRLLGMAEFLDDSHLTNVESVLVALGCKECLVPIERGKSVEYKMLCDVLAKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIQAVQDLVSGFEFAPGALGALLSYAELLADESNYGNYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINLRLDVVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQKRRAGLQHVVKLYQSSIRLPYIKSALDRYDGQFSSMMKNRYLKDLELWTGVDRLNKFIELVETAVDLDHLENGEYMISSSYDTALTELKEKQELLESQIHNLHKQTADDLDLQIDKTLKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKSCQKQLVIKVVEIAATFSEVFESLAALISELDVLLSFADLASSCPTPYTRPEITSSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIREKSWFQIITGPNMGGKSTYIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALAHENGSNDTHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHIFSPSVISLIDSSTEEVGSKRKREFESDDMSKGAAKARQILEAFVALPLETMDKTEAMQEVRKLKDNLEKDAQNCLWLQKFL 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03523 920 FunFam DNA mismatch repair protein 295 512 - -
Vifa4g03523 920 Pfam MutS family domain IV 470 567 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 Coils Coil 474 494 - -
Vifa4g03523 920 FunFam DNA mismatch repair protein MSH2 514 617 - -
Vifa4g03523 920 FunFam DNA mismatch repair protein 123 292 - -
Vifa4g03523 920 Coils Coil 892 912 - -
Vifa4g03523 920 FunFam DNA mismatch repair protein MSH2 618 916 - -
Vifa4g03523 920 SMART mutATP5 660 853 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 FunFam DNA mismatch repair protein 9 122 - -
Vifa4g03523 920 Pfam MutS domain II 144 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 Gene3D - 618 917 IPR027417 -
Vifa4g03523 920 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 CDD ABC_MSH2_euk 631 845 IPR032642 GO:0005524
Vifa4g03523 920 Coils Coil 371 391 - -
Vifa4g03523 920 PIRSF MSH2 9 920 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 Pfam MutS domain V 663 840 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa4g03523 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 840 IPR027417 -
Vifa4g03523 920 Coils Coil 554 574 - -
Vifa4g03523 920 Gene3D - 524 617 - -
Vifa4g03523 920 Gene3D - 295 523 - -
Vifa4g03523 920 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Vifa4g03523 920 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 57 839 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vifa4g03523 920 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03523 Vifa-Chr4 1104809625 1104816785 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03523 K08735 - gmx:100792272 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03523 4 1104809625 1104816785 Vifa4g03523 4 1104809625 1104816785 ECH