Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03519 ATGGCGAAGCCTCGTAAGCCCAAGAACGAAGACCCAAAGCCCGAAAACTCAGGAGCCGTAGTTCACCATCAAAAGCTATGTCTTTCCATCGACATGGACAAACGCTTAGTCTACGGCTACACTGAATTGGAAATTGCGGTGCCGGAGATTGGGATCGTAGGGTTACATGCGGAGAATTTAGGGATTGAGAGTGTATGGGTTGACGGTGAACCTACTGCGTTTGAGTATTATCCTCATCAGTATCAGCAGTTGGAAAATGACAAGAGATGGAGTTCGGTTTCTGATCCTACATCTGCTGCTGATGCTGCTGTGTCTGTGTATTTATCTTCTTTGGAGAAAGAACTTGTTCCCAATTTACTCATCAATTGCTGTAAACCTTTCAAGATTGAAGCTGATCAGCAGCAGCAGCAAGAGCAGCCTGTTCCTGAAAATGGGTTTCATAATACCTGCGCCGCCGAACCTAAGCAGAATGTGAGATCAGTTCGTATTGACTATAGCATAGAAAAGGCAGAGACGGGAATCCACTTCAGAGATAATGTTCTTCATACTGATAATCAAATGAGGAGGGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTTGCAGCAATGCTGCTACGACTTGGAATTCACTGTCGCACACAATCTTGTAGCTGTCAGTACTGGAAGCTTGTTATACCAGGTCTTAAGCAAGGACAATCCTCCCCGGAAAACATATGTCTATAAATTAGATGTTCCAGTTGCTGCAAGTTGGATATCATTGGCTGTTGCGCCATTTGAAGTTCTTCCAGATCACCAATTTGGCCTCATATCACATCTGTGTTTGGCACCTAATCTGGCAAAAATGCGGCATACAGTGGAGTTCTTCCATAATGCCTTCAGCTCCTATAAGGATTATCTTTCTGTAGACTTCCCATTTGACTCGTACAAGCAAGTTTTTGTAGAGCCTGAGATGGCAGTTTCATCATTGAACTTAGGAGCCTCTATGAGTGTATTTAGTTCTCAAATTTTGTATGATGAGAAGGTTATTGACAAGACTATTGATACAAGGGTAAAACTTGCTTATGCCCTTGCAAGACAGTGGTTTGGTGTGTATATCACTCCTGAGTCACCAAATGATGAGTGGCTCTTGGAAGGGCTCGCTGGTTTCTTGGCAGATTTTTTTATTAAGAAGCATTTGGGTAATAATGAGGCACGGTACCAAAGATATAAGGCTAATTGTTCTGTTTGCAAAGTTGATAACGGTGGAACAACAGTTTTGAGCTGTTCAGCTTCCTGTAAGGATTTATATGGAACACATTGCATTGGGTTGTACGGAAAAATAAGAGCATGGAAGTCTGTGGCAGTTGTTCAGATGCTGGAAAAGCAAATGGGTCCTGAATCTTTCCGTAGAATTTTGCAAACTATAGTTACTCGGGCTCAAGATAAAGTACGCTCAGTGAAAACACTTAGTACTAAGGAGTTTCGACATTTTGCTAACAAGGTTGGAAATTTAGAACGTCCTTTTCTTAAAGATTTCTTCCCCCGTTGGGTCGGTTCTTGTGGATGTCCTAATTTAAGGATGGGTTTTTCCTATAATAAACGAAAGAATGTGGTTGAACTGGCTGTGTTGAGAGGATGCACAGCATTGCAGACTTCGAGTACAGCTGTTCTTGATATTAATCCAGATACTGAAAATCGAGATGCAGATTCTGGATGGCCTGGTATGATGAGTATCAGAGTGTATGAACTTGATGGTATGTATGACCATCCTATTCTACCAATGGCTGGAGAAGCATGGCAGCTTTTGGAAATTCAATGCCACTCAAGGCTTGCTGCTAGACGGTTTCAAAAATCAAAAAAAGGTTTAAAACATGACGGCTCTGATGACAACGGTGACATGCCTTCAATGGATATACGCTCCAGTACCGAGTCCCCTTTATTATGGATCAGAGCAGATCCTGACATGGAGTACCTTGCTGAGATTAACCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCTGCCCTTGAGGCATCACCCCAGCTATCATTTTCTGTTGTAAATGCCCTGAACAGTTTTCTTACTGACTCCAAGGCTTTCTGGAGAGTAAGAATCGAAGCAGCATTTGCATTGGCGAATTCAGCATCTGAGGAAACTGATTTTTCTGGTCTACTCCATTTGGTGAAATTTTACAAGAGTCGAAGGTTTGATTCTGACATTGGACTCCCAAAGCCAAATGATTTTCATGATTTTGCCGAGTATTTTGTTCTTGAGGCCATTCCACATGCTGTAGCTATGATTAGAGCTGCTGACAAGAAAAGTCCAAGAGAGGCTATCGAATTTGTTTTACAGCTATTAAAGTATAATGACAACACTGGCAACCCTTACTCAGATGTCTTCTGGCTTGCTGCACTGGTCCAATCAATTGGCGAGTTTGAGTTTGGGCAACAGAGTATTCTTCTATTGTCATCACTCCTCAAGCGCATTGACCGGCTTTTACAATTTGATAGTCTCATGCCAAGCTACAACGGAATCTTGACTGTCAGTTGTATCCGGACATTGGCCCAGATTGCCATAAAACTTTCAGGATTCTTTCCTCTTGATCGCATATATGAACTTTTAAAGCCTTTTCGAGACCTAAAGGCAATTTGGCAAGTTCGAATCGAAACAAGCAGAGCACTCCTTGATCTCGAATTCCACTGCAAGGGCATTGATGCAGCACTTCTTTTATTTACCAAATATGTTGAGGAGGAGCCTTCCTTGAGAGGCAAGTTAAAATTGGCCACCCATGTTATGAGGCTATGCCAGATGAGAGATGGTTTGATTTTAAATGATGAAATTACAAGCCACACACTTGTCTCTTTGCTCAGTTTACTGGAGGGGCGTATGTCATTTAATAATGTTTTTCTCCGACACTACTTGTTCTGCATATTACAAATATTGGCGAAAAGACCCCCAACTCTTCATGGAATTCCGAGAGAAAGCAGAACGTTGCATATGAGTCTTACAGAAGCTGGTAACTATCAGAGGAACCTATTTGTACTTGATTCCGAAAATAAACCTTTGGAGTTGCCAAATTCCACCCAAAATCTTACACAAGATTTGATCGTAACTGAGGGTTTTAGGGATGCACTTGATGAAGCTCCCACGAACCAAGTTTTTGAAGCTTCTAAGGACCAAACCTTTGAAGCTCCCAAAGAAGTACACGTTGAAGCTTTAAAGGAAGCGCCCCACGAGGCTCCCAAAGAGGACTTAACAGGATTCCCCCCTGAAGCACCGATTGAAGCTCCCAATGAAATTTACAAGGAAGCAGATACTGTATCCAATAGCCATGAAAGAAAAAGGCTAATCAAAATCAAGGTTAAACAATCTTCTGCCACCAGTAGGGCTGATACTGATAATCAAATGGTTGAGCGCTCTTTAGGTGGTCGTAATGATATTGATCATGGAGCTAGCAGTTCAGTTTCAGTTTCAGTAGATGCACCTCTGAGGAATTTTGCCGAAACTGTTAGCATCGGTAATCACAATATTGAAGAAGTTAATTCTTGGCATGATCCTGGTTCCCGAATGACTGCCAGCATCGGCAGTGCAAAAATTTTGGGTGATGAATTGGTCAAAGAACTCCAATGCACTGCCGATTCAAGTGTAGTTTACCCACAACCTAAGCATGAAGATCCGTCACCATCTAGTATTATCCAGGATAACAATATAGACGCTGATGCACGGCGATTTGCCAGCCTTCAAACACTCTCAGTTGCTAGACTCAATCACAATGGAGAATCATTTGGCAAAGAAATTTCTGCTCGCAGGAAAGAAAAACACAGAGATAAGGATAAGAAACGGAAACGGGAAAGTCACAAAGGACAGCATGATGACCCAGAATACTTAGAGAGAAAGCGATTAAAGAAAGAGAAAAAACGCAAGGAAAAAGAATTAGCAAAACTGCAAAGTAATGAAGCAAAAAGATCCTCCATAGACTTTTCATGTAAGAAAGAGAAACCTGTATTGGACGAAATGAAGCAGCTGAAATCTGTTGAACCCAGCGGTTATAATACTATACCAGACATTAGAACTATTGATACCAAACCGAGGGTATCTGAAGGTACATCTGGTGCGCCCAAAATTCGAATTAAAATTAAAAATCGAATGCTTAACAAGTCAGAGAATAAATGA 4167 0.4164 MAKPRKPKNEDPKPENSGAVVHHQKLCLSIDMDKRLVYGYTELEIAVPEIGIVGLHAENLGIESVWVDGEPTAFEYYPHQYQQLENDKRWSSVSDPTSAADAAVSVYLSSLEKELVPNLLINCCKPFKIEADQQQQQEQPVPENGFHNTCAAEPKQNVRSVRIDYSIEKAETGIHFRDNVLHTDNQMRRARCWFPCIDDNLQQCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYVYKLDVPVAASWISLAVAPFEVLPDHQFGLISHLCLAPNLAKMRHTVEFFHNAFSSYKDYLSVDFPFDSYKQVFVEPEMAVSSLNLGASMSVFSSQILYDEKVIDKTIDTRVKLAYALARQWFGVYITPESPNDEWLLEGLAGFLADFFIKKHLGNNEARYQRYKANCSVCKVDNGGTTVLSCSASCKDLYGTHCIGLYGKIRAWKSVAVVQMLEKQMGPESFRRILQTIVTRAQDKVRSVKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPNLRMGFSYNKRKNVVELAVLRGCTALQTSSTAVLDINPDTENRDADSGWPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSRLAARRFQKSKKGLKHDGSDDNGDMPSMDIRSSTESPLLWIRADPDMEYLAEINQLEKDKDVIAQAQAIAALEASPQLSFSVVNALNSFLTDSKAFWRVRIEAAFALANSASEETDFSGLLHLVKFYKSRRFDSDIGLPKPNDFHDFAEYFVLEAIPHAVAMIRAADKKSPREAIEFVLQLLKYNDNTGNPYSDVFWLAALVQSIGEFEFGQQSILLLSSLLKRIDRLLQFDSLMPSYNGILTVSCIRTLAQIAIKLSGFFPLDRIYELLKPFRDLKAIWQVRIETSRALLDLEFHCKGIDAALLLFTKYVEEEPSLRGKLKLATHVMRLCQMRDGLILNDEITSHTLVSLLSLLEGRMSFNNVFLRHYLFCILQILAKRPPTLHGIPRESRTLHMSLTEAGNYQRNLFVLDSENKPLELPNSTQNLTQDLIVTEGFRDALDEAPTNQVFEASKDQTFEAPKEVHVEALKEAPHEAPKEDLTGFPPEAPIEAPNEIYKEADTVSNSHERKRLIKIKVKQSSATSRADTDNQMVERSLGGRNDIDHGASSSVSVSVDAPLRNFAETVSIGNHNIEEVNSWHDPGSRMTASIGSAKILGDELVKELQCTADSSVVYPQPKHEDPSPSSIIQDNNIDADARRFASLQTLSVARLNHNGESFGKEISARRKEKHRDKDKKRKRESHKGQHDDPEYLERKRLKKEKKRKEKELAKLQSNEAKRSSIDFSCKKEKPVLDEMKQLKSVEPSGYNTIPDIRTIDTKPRVSEGTSGAPKIRIKIKNRMLNKSENK 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03519 1388 SUPERFAMILY ARM repeat 455 984 IPR016024 -
Vifa4g03519 1388 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 1306 IPR037813 GO:0005669
Vifa4g03519 1388 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 273 519 - -
Vifa4g03519 1388 Gene3D Neutral Protease Domain 2 268 515 IPR027268 -
Vifa4g03519 1388 FunFam Transcription initiation factor TFIID subunit 264 515 - -
Vifa4g03519 1388 MobiDBLite consensus disorder prediction 1261 1326 - -
Vifa4g03519 1388 CDD M1_like_TAF2 23 511 - -
Vifa4g03519 1388 Gene3D tricorn interacting facor f3 domain 20 256 IPR042097 -
Vifa4g03519 1388 MobiDBLite consensus disorder prediction 611 633 - -
Vifa4g03519 1388 Coils Coil 1294 1321 - -
Vifa4g03519 1388 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 17 257 IPR042097 -
Vifa4g03519 1388 FunFam Transcription initiation factor TFIID subunit 2 108 256 - -
Vifa4g03519 1388 Pfam Peptidase family M1 domain 286 483 IPR014782 GO:0008237|GO:0008270
Vifa4g03519 1388 MobiDBLite consensus disorder prediction 1283 1298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03519 Vifa-Chr4 1102744610 1102769154 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03519 K03128 - gmx:100792795 2255.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03519 4 1102744610 1102769154 Vifa4g03519 4 1102744610 1102769154 ECH