Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03513 ATGGACTGGGGTGTTAATAATAGTACTAATAATAATAATAATAATAATCACTTGAGAAAGCACAAAGAAAACCATATGATGGATTTGGTACTGGTTTCAAATATGGATCCTGTAAATATTGGCCTTGCTTCTTCAGAAAATCCAATTCCCATTACTTCACTGAAGCCAAGAAAGAAAACAATGACTTCAGTTTATTTAAAATTCTTCCAAACTGCTGCTGATGGTAAAACTAGGAAATGCAAGTTTTGCGGACAGACCTATTCCATTGCAACCGCCACAGGCAATTTGGGTAGGCATCTCGCTAATCGTCACCCGGGCTATGATAAGACTGGTGAAGCTGTCAACAATTCAGCAACTCGGACGACTGTCATTGTCAAAAAGTCGCAGCCTCAAGGAAAAGCGAACCAGATTGATTATGATTATCTAAATTGGTTACTCATTAGATGGCTTGTTTTAGCTTCTCTCCCTCCTTCAACTCTAGAAGAGAAGTGGCTTGTGAATTCGTACAAGTTTCTAAACCCGTCCATACAAATTTGGCCTAGTGAGAAATATGGATCTGTACTCCACGAGGTTTTCAGAAGCATGAGGGAAGATGTAAGAGCGTTGTTAGAACAGGTTTCGTGTAAATTCTCCATCACACTAGATTTCTGGACTTCCTTTGAACAGATTTTCTTTATGAGTGTAACGTGTCAGTGGATTGATGAAAACTGGTGCTTCAACAAGTTGCTTCTTGACATCTGTCGCATACCCTATCCGTGTGGTGGTGCAGAAATTTATCGCTGTATTGTGAAAGTTCTTAAATTTTATGATATTGAAAGCAGAGTCCTTTCGTGTACCCATGATAATAGCTCAAGTGCCGCGCATGCCTGCCATAGTTTGAAAGAGGACTTGGATGGTCAGAAAATAGGACCGTTCTGTTATATTCCGTGCGCTGCTCGAACTTTGAACATCATAATAGATGATGGATTGAGATCTGCGAAACAAGTGATTTCAAAGATCAGAGAATTTGTAATAGAGTTAAATGCCTCACCGGTAATCTCTGAGGATTTTATTCAAATCTCTACCGCCTATCAAGAAGGTACTTGGAAATTTCCTCTCGATGTTTCAGCAAGGTGGAGTGGAAGCTACCAAATGCTTGATCTTGTTCACAAGGCTGGTAAATCAGTGGATGTGATTATTCGTAAACATGAAGAGACACTAGGCAGTAGGATACTCCTGAGCTCTTCTGACAAAAGCGTCGTTAACATCACACATCAATATCTTGAGCCATTTTACAAAACCACAAACGATATCTGCACGAGCAAGGTGCTAACAGTTGGGCTTGTTCTTTTCTTCATGGATCACATCTCAGAAACAATTGCTACCTGCAGAGAATCACGCCCGAGCCCCGAGTGGCTAAAAAGTGCTGCAGAAGAAATGGCTAAAAAGGCTAGAAGTTATATTAGTCAAGTTTGCAACATATTTACATATATGACAGCTATTCTAGATCCTCGAATAAAGGGAGAGTTGATACCTGATAGTTTAAATTCGCAAAGTTTTCTGGATGAAGCAAGGACGCATTTTATCAGAAACTATTCTGTTAACCATTTCTCCTCCATGAGTTCTGGTTACAATGCTCAAGAAATCGAAGATGGAGGAATTGTTTCCTTTGCTGAGGAAATAGCTCGCAAAAAACGTAGGACAAACATGAGTTCTGCAACCGATGAGCTTACGCAGTACTTATCAGAAGCTCCAGCTCCTATAGTAACAGACGTTCTTGAATGGTGGAAGATAAACAGTACACGCTACCCTCGACTTTCTCTGATGGCTAGAGATTTCTTGGCAGTACAGGCAACATCAGTAGTGCCCGAAGAACTTTTCTGTGGCAAGGGTGATGAAATTGACAAGCAACGATTCTGTATGCAGCATGATAGCACACAAGCTATTCTTTGTATCAAGTCATGGATTCAGGTTGGCATCAAGTTTAAGTTTAAGTCGAATGAGATAGATTATGAGAGGTTGATGGAACTAGCAGCTGCATCTACAACAGATAATAGCCCTTCAAGCTCTGAGAAGAAGCCAAAATAG 2067 0.4035 MDWGVNNSTNNNNNNNHLRKHKENHMMDLVLVSNMDPVNIGLASSENPIPITSLKPRKKTMTSVYLKFFQTAADGKTRKCKFCGQTYSIATATGNLGRHLANRHPGYDKTGEAVNNSATRTTVIVKKSQPQGKANQIDYDYLNWLLIRWLVLASLPPSTLEEKWLVNSYKFLNPSIQIWPSEKYGSVLHEVFRSMREDVRALLEQVSCKFSITLDFWTSFEQIFFMSVTCQWIDENWCFNKLLLDICRIPYPCGGAEIYRCIVKVLKFYDIESRVLSCTHDNSSSAAHACHSLKEDLDGQKIGPFCYIPCAARTLNIIIDDGLRSAKQVISKIREFVIELNASPVISEDFIQISTAYQEGTWKFPLDVSARWSGSYQMLDLVHKAGKSVDVIIRKHEETLGSRILLSSSDKSVVNITHQYLEPFYKTTNDICTSKVLTVGLVLFFMDHISETIATCRESRPSPEWLKSAAEEMAKKARSYISQVCNIFTYMTAILDPRIKGELIPDSLNSQSFLDEARTHFIRNYSVNHFSSMSSGYNAQEIEDGGIVSFAEEIARKKRRTNMSSATDELTQYLSEAPAPIVTDVLEWWKINSTRYPRLSLMARDFLAVQATSVVPEELFCGKGDEIDKQRFCMQHDSTQAILCIKSWIQVGIKFKFKSNEIDYERLMELAAASTTDNSPSSSEKKPK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03513 688 Pfam hAT family C-terminal dimerisation region 569 649 IPR008906 GO:0046983
Vifa4g03513 688 Pfam BED zinc finger 64 105 IPR003656 GO:0003677
Vifa4g03513 688 SMART bed5 60 107 - -
Vifa4g03513 688 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 30 645 - -
Vifa4g03513 688 Pfam Domain of unknown function (DUF4413) 432 512 IPR025525 GO:0003677
Vifa4g03513 688 SUPERFAMILY Ribonuclease H-like 196 651 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03513 Vifa-Chr4 1099718391 1099720744 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03513 - - ahf:112708868 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03513 4 1099718391 1099720744 Vifa4g03513 4 1099718391 1099720744 ECH