Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03510 ATGCTACAAAACCCAAGAACACTGCGAACTTCCCCTCAACCATTCACATTCAACCTTCCAACTCACACATCAACACCATCACCTTCATCATTCCAACTATTAGGCACAACCCCACATTTTCCAATCCTCAAACAGCAATGTAGATTGTCGCGTAGAGAGCTCGCAATCTACAGCAACTCTTGCTTGATGCTTCTTTTGGCTGATGGATCCAGAGCAAGAGCAGAAGATGTTACCAACAGTGACCAACTGGGACAGAGTTTGACTAACACTCACAGCTGCACTGAAAGAAAACCTACAAAACACGTTTTCTTTGACGTATCTGTTGATCGCGAACCGGTTGGTCGCGTTACTATAGAGCTCTATGGAGATGATGTCCCTGTAGGAGTTGAGAGGTTTAGCAAGATTGTCAGTGGAGCTGCTGGTATAAGCTACAGAAGGAAAGAGTTTGTTAAAATCCTGCCAAATTACGTCCAACATGGCGGTCTTAGATCATATGGGGTGGATGCAGAACTAGCTAACAAGACAGGGAGCAATTTGGCTACTGAAAATCTTGTTGAGGAATGGGAGAGAATGTATGAGAAATGCCCTGGGACTAAAAATGTGGCTGGAAGTGTAGGAATCATTGTGAGAGATCCGTCAAAACCACCCCCTAAGTTTAAACTGGTCGCAAGACTAGGAAAGCTTGAGATTGATCAAGAAGAAGTTGGAACAGATCCTAATGGGACAGAATTTGTCATTGCGACAAAGGATTCGCCGGAATTAGATGCTTCATCTCTGGTAATTGGAAGGGTGGTAGGAGGGATGGAGGTTGTGCAGAGGATTAGTGAGGTAAAAACAGTACAAGAGAATACGAGCTCTCCATACTTTAGGGTGGCAAAGCTTATAGGAGACAAGAGGGCTGTAGTAGCAGAAAGGGGATTCAACCGTCCTTATTCCAAAGTTGTCGTTACAAACTGTGGTGTAATACAGTAG 972 0.4424 MLQNPRTLRTSPQPFTFNLPTHTSTPSPSSFQLLGTTPHFPILKQQCRLSRRELAIYSNSCLMLLLADGSRARAEDVTNSDQLGQSLTNTHSCTERKPTKHVFFDVSVDREPVGRVTIELYGDDVPVGVERFSKIVSGAAGISYRRKEFVKILPNYVQHGGLRSYGVDAELANKTGSNLATENLVEEWERMYEKCPGTKNVAGSVGIIVRDPSKPPPKFKLVARLGKLEIDQEEVGTDPNGTEFVIATKDSPELDASSLVIGRVVGGMEVVQRISEVKTVQENTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVVVTNCGVIQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03510 323 Gene3D - 89 323 IPR029000 -
Vifa4g03510 323 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 256 271 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 243 255 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 228 243 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 135 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 103 321 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 FunFam Peptidyl-prolyl cis-trans isomerase B 92 323 - -
Vifa4g03510 323 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 323 IPR044185 -
Vifa4g03510 323 MobiDBLite consensus disorder prediction 1 29 - -
Vifa4g03510 323 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 286 IPR002130 GO:0000413|GO:0003755
Vifa4g03510 323 SUPERFAMILY Cyclophilin-like 98 322 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03510 Vifa-Chr4 1099571402 1099572529 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03510 K03768 - gmx:100796313 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03510 4 1099571402 1099572529 Vifa4g03510 4 1099571402 1099572529 ECH