Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03493 ATGTCAAAGGTTAAAGTTGATGAACTTAATCAACTAAGAGAAATCTTCACACGCTTCGACATGGATTCAGATGGAAGCCTAACAATGTTAGAGTTAGCAGCACTTATCCGTTCATTAGGTCTCAAACCATTAGGTGACCAAGTTCAAGTCATGTTATCAAAAATGGACTCAAACAGAAACGGTTCTGTTGAGTTTGATGAACTAGTAAGGGTCATAATGCCAAACATGATGAAAGAAGAAGGATTTGTGAATCAAGAACAACTCATAGGTGTGTTTAAGAGCTTTGATCGCGATGGAAATGGTTATATTTCAGCTGCTGAATTGGCTGGAGCTATGGCTAAAATGGGTCAGCCACTTACATATAAAGAGCTTAGAGATATGATTAAAGAAGCTGATATGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATTATGGCTTCTTCTGCTTCTGATTTATTAGGAGAGTTTGGTTATAGAAACAAAACACATGCCTTTCAATTGTAA 513 0.3665 MSKVKVDELNQLREIFTRFDMDSDGSLTMLELAALIRSLGLKPLGDQVQVMLSKMDSNRNGSVEFDELVRVIMPNMMKEEGFVNQEQLIGVFKSFDRDGNGYISAAELAGAMAKMGQPLTYKELRDMIKEADMDGDGVISFSEFATIMASSASDLLGEFGYRNKTHAFQL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03493 170 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Vifa4g03493 170 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Vifa4g03493 170 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Vifa4g03493 170 Gene3D - 79 158 - -
Vifa4g03493 170 FunFam Probable calcium-binding protein CML15 1 77 - -
Vifa4g03493 170 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Vifa4g03493 170 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Vifa4g03493 170 SMART efh_1 47 75 IPR002048 GO:0005509
Vifa4g03493 170 SMART efh_1 87 115 IPR002048 GO:0005509
Vifa4g03493 170 SMART efh_1 11 39 IPR002048 GO:0005509
Vifa4g03493 170 SMART efh_1 123 151 IPR002048 GO:0005509
Vifa4g03493 170 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Vifa4g03493 170 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Vifa4g03493 170 FunFam CALML5 isoform 1 80 150 - -
Vifa4g03493 170 CDD EFh 87 149 IPR002048 GO:0005509
Vifa4g03493 170 PANTHER CALCIUM BINDING PROTEIN 84 148 - -
Vifa4g03493 170 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Vifa4g03493 170 SUPERFAMILY EF-hand 5 148 IPR011992 -
Vifa4g03493 170 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Vifa4g03493 170 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Vifa4g03493 170 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03493 Vifa-Chr4 1095250543 1095251055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03493 7 157 EF-hand Containing Proteins AT1G18530 72.185 9.56e-76 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03493 K13448 - gmx:100795885 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03493 4 1095250543 1095251055 Vifa4g03493 4 1095250543 1095251055 ECH