Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03488 ATGCCTACTATCAGTGTAGGGCGGGATCGTCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTTGAAGACCTGTGCTTCAGTTTTGGAATTGAGCTCGACGATGTTACTACAGAAAAAGCGATTGTGAGAAAAGAGAAGCATTTGGATGAAGAAGAAGCTGACGAGGATGAAGAAATTATCTACAAAATTGAAATTCCTGCAAACAGATATGACCTACTCTGTCTTGAAGGACTGGCTCAAGCCCTTCGAGTTTTCTGTGGGATTCAGGAAATCCCCACTTACAAATTGTCTGACATTAGTAAGGATAAAATGCTTAAAATGCATGTGAAGCCAGAGACATCTTTGATTCGTCCCTTTGTTGTATGTGCTGTATTGAGAGGTATAACTTTTGATAAGGCGAGATACAACAGCTTTATTGACCTCCAAGACAAGCTGCATCAAAATATTTGTCGGCGAAGGACACTTGTGGCCATTGGCACTCATGATCTGGATAAACTTGAGGGTCCTTTTACCTATGAGGCTTTACCACCTTCGAGTATTAACTTTACTCCTCTAAAACAGGAAAGGAGCTTCAAGGCTGATGACCTCATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATTATTGAGGACTCTCCCGTTTATCCTGTTTTATATGATAGTAAGAGAACTGTTTTATCTTTACCCCCGATTATCAATGGTGCACATTCAGCCATCACTTTGGAGACAAAGAATGTGTTTATTGAATGCACTGCTACTGATCTGACAAAGGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTTGCGGAATATTGTGAAAATAAGTTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGAAAATCTCACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACAGGATTGATTGGAGTATCCTTGGAGGCAGAAGAGGTTACCAAGTTTTTAAATCGGATGCAATTGCATGCCAAGCAATCTACATCTGACAGTAAACAGTGCAACTTTACTGTATCTGTACCTCCTACTAGAAGTGATGTCCTTCATCCATGTGATGTTATGGAGGATGTGGCAATAGCTTATGGATTCAATGCTATTAAGGATCAAGCAATAGTTGATAATAAGGGGTCAAAGAGATTAGCTGGTTCCTTGACACTGCTTCCTCTGAATGAGCTGAGTGATCTTATCAGAAAAGAGGTTGCAATGATTGGGTTCACGGAGGTTTTGACATTCATACTCTGCTCTAAAAAAGAAAACTTTTCCATGCTAAACCGCAAAGATGATAAATCCAAAGCGGTTATCATTGGAAACCCTAGATCTTCAGACTTCGAGGCTGTCCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGCTGCTCACAATAAGGATCACCCAAAACCCATAAAGATTTTTGAAGTGGGTGATATAGCTATTTTGGATGACAATGATGTTGGTGCAAAAAATCTACGCCAACTTGCTGCACTGTACTGTGGTGCTAATGCAGGATTTGAGATAATTCATGGATTAGTGGACAAAGTAATGGAAAAGAATGGGATTACCTTTGTTTCACCTGGTGATAAATCAGGGTATTATATTGAGCGGTCAGATGAGCCTGAGTTTCTTGCTGGTAGACAAGCTAGAATTATTTACAAGGGAAAGCAAGTTGGGACTTTTGGCATTGTTCATCCAGAGGTATTAAACAACTTCGACATTCCTGATCCCTGCTCCTTTGTTGAACTCAACATTGAAAGTTTCTTGTAA 1809 0.3952 MPTISVGRDRLFAALGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLDEEEADEDEEIIYKIEIPANRYDLLCLEGLAQALRVFCGIQEIPTYKLSDISKDKMLKMHVKPETSLIRPFVVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSINFTPLKQERSFKADDLMEFYKSDLKLKKFLHIIEDSPVYPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFAEYCENKFVIEPVEVISSDGKSHIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKQSTSDSKQCNFTVSVPPTRSDVLHPCDVMEDVAIAYGFNAIKDQAIVDNKGSKRLAGSLTLLPLNELSDLIRKEVAMIGFTEVLTFILCSKKENFSMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTAAHNKDHPKPIKIFEVGDIAILDDNDVGAKNLRQLAALYCGANAGFEIIHGLVDKVMEKNGITFVSPGDKSGYYIERSDEPEFLAGRQARIIYKGKQVGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03488 602 ProSiteProfiles B5 domain profile. 304 384 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vifa4g03488 602 FunFam phenylalanine--tRNA ligase beta subunit 403 602 - -
Vifa4g03488 602 FunFam Phenylalanyl-tRNA synthetase, beta subunit 307 382 - -
Vifa4g03488 602 Gene3D - 307 382 - -
Vifa4g03488 602 Gene3D - 101 305 IPR020825 -
Vifa4g03488 602 Gene3D - 1 89 - -
Vifa4g03488 602 Gene3D Bira Bifunctional Protein; Domain 2 403 602 IPR045864 -
Vifa4g03488 602 Pfam tRNA synthetase B5 domain 309 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vifa4g03488 602 FunFam Phenylalanine--tRNA ligase beta subunit 1 90 - -
Vifa4g03488 602 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 90 IPR040659 -
Vifa4g03488 602 SUPERFAMILY Putative DNA-binding domain 308 383 IPR009061 -
Vifa4g03488 602 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 404 598 IPR041616 -
Vifa4g03488 602 FunFam phenylalanine--tRNA ligase beta subunit 101 305 - -
Vifa4g03488 602 SUPERFAMILY Class II aaRS and biotin synthetases 376 601 IPR045864 -
Vifa4g03488 602 Pfam B3/4 domain 120 281 IPR005146 GO:0003723|GO:0004826
Vifa4g03488 602 SUPERFAMILY Putative DNA-binding domain 4 95 IPR009061 -
Vifa4g03488 602 SMART B3_4_2 119 281 IPR005146 GO:0003723|GO:0004826
Vifa4g03488 602 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 602 IPR045060 GO:0004826|GO:0006432
Vifa4g03488 602 SUPERFAMILY PheT/TilS domain 220 283 - -
Vifa4g03488 602 CDD PheRS_beta_core 404 601 IPR041616 -
Vifa4g03488 602 SMART B5_2 306 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vifa4g03488 602 NCBIfam phenylalanine--tRNA ligase subunit beta 1 602 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03488 K01890 - gmx:100805249 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03488 4 1093015207 1093022771 Vifa4g03488 4 1093015207 1093022771 ECH