Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03479 ATGTCACTCACCCGCACCTCAATTCACCGATTCCGTTACATCTACCGCACCATATCATCACCGTCATCAACTTCTATTACCACTCGCTTTCAATTTCAACGCTTCATCACCTCTCATCCCATTCCCAAACCCTTCCAATTCAACTCTTCTTACTCCTCCTCCTCCTCCTCCTCAGTCAAACAAGACTTCATCTGCGACGGCGATGACGCGTATCCCACCGGTGACTTCAATTTTGAACCAGTTACCGGCTTCAACAAGTTCACCGTCAAGCTAAAGACGCTAATAGCCTTACCTTGGGAGCGTGTTCAACACGGCAGCATCTTGAAAATCGTTTTGCGCGGCCAGATATCCGATCAACTGAAAAGTAGATTCTCCAAGGGATTATCTCTCCCTCAAATTTCTGATAATTTTTTGAAAGCAACTTACGATCCTCGTGTTTCTGGCGTATATCTTCATATCGATACTTTAAATTGCGGTTGGGCTAAAGTTGAAGAAATTCGAAGACAGATCTTAAATTTCAGAAAATCAGGGAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAAGAATATTACATTGCTTGTGCATGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTCTGTTTGGATTGACTGTTCAAGCTGGATTTGTCAGAGGTTTATTTGACAACCTTGGAATTGAACCACAAGTTGAAAGAATTGGAAAATATAAAAGTGCAGGAGATCAACTAACCCGTAAAACCATGACTGAAGATAATCGTGAGATGCTGACCACATTGCTGGATAATATCTATTCAAATTGGCTGGATAAAGTCTCTTCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTTATTAACGAAGGTGTGTATCAAGTTGACAAACTGAAAGAAGAGGGTTTCATATCATGCATACTTTATGATGACGAGGTTATGACTAAGTTGAAGGAGAGACTTCGGGTGAAAACAGACAAAAATCTGCCTGTGGTTGATTTCAGAAAATACTCTGGAGTTAGAAAATGGACTGTTGGAGTATCAGGTGGTAAAGAACTCATAGCTGTCATCCGAGCCTCAGGGGCCATTCACCGTGTTGAGAGTCCATTAAGTGCCCCTAGCAAAAGTATCATCGGAGAGAAATTCATTGAGAAGATCCGTAGGGTCAGAGAGTCAAAGAAATTCAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTTTGGCTGCTTCAAAACCAGTTATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAGGAGCTATTGTTGCAGAAAGCCTTACCTTAACTGGTTCAATTGGAGTTGTTTCAGGAAGATTTAACCTTGGGAAACTTTATGAGAAGATTGGTTTCAACAAAGAACTTATTTCAAGGGGTAAATATGCCGAACTCCATGCAGCTGAACAGCGCTCTTTAAGGCCACATGAAGCAGAGCTATTTGCCAAGTCTGCACAGAATATTTATAAACAATTTCGAGATAAGGCGGCTTTTTCCAGATCAATGACGGTAGACAAGATGGAAGAGGTCGCACAGGGGAGGGTTTGGACCGGTAAGGATGCAGCATCTCATGGGTTGGTTGATGCTATTGGTGGGCTATCCCGTGCTATTGCTATAGCAAAATTGAAGGCTAATATACCTCAAGACAGACAGGTTACTATTGTGGAGCTCTCAAGACCCAGTCCTTCTCTACCTGAGATTTTAAGCGGTCTAGGCAATTCTCTCGTTGGAGCTGACGAAACACTTAAGGAACTATTACATGACTTGACAATTTCTGATGGAGTTCAAGCACGGATGGACGGAATCGTGTTTCAGAAATTGGAAGCATATCCATCTCCCAACCCCATTTTGGCATTGATGAAAGATTACCTCGGTTCTATGTAG 1971 0.4221 MSLTRTSIHRFRYIYRTISSPSSTSITTRFQFQRFITSHPIPKPFQFNSSYSSSSSSSVKQDFICDGDDAYPTGDFNFEPVTGFNKFTVKLKTLIALPWERVQHGSILKIVLRGQISDQLKSRFSKGLSLPQISDNFLKATYDPRVSGVYLHIDTLNCGWAKVEEIRRQILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAGFVRGLFDNLGIEPQVERIGKYKSAGDQLTRKTMTEDNREMLTTLLDNIYSNWLDKVSSARGKKREDIENFINEGVYQVDKLKEEGFISCILYDDEVMTKLKERLRVKTDKNLPVVDFRKYSGVRKWTVGVSGGKELIAVIRASGAIHRVESPLSAPSKSIIGEKFIEKIRRVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGAIVAESLTLTGSIGVVSGRFNLGKLYEKIGFNKELISRGKYAELHAAEQRSLRPHEAELFAKSAQNIYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDRQVTIVELSRPSPSLPEILSGLGNSLVGADETLKELLHDLTISDGVQARMDGIVFQKLEAYPSPNPILALMKDYLGSM 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03479 656 Gene3D - 351 502 - -
Vifa4g03479 656 Pfam Peptidase family S49 424 574 IPR002142 GO:0006508|GO:0008233
Vifa4g03479 656 Pfam Peptidase family S49 173 325 IPR002142 GO:0006508|GO:0008233
Vifa4g03479 656 CDD S49_SppA_67K_type 108 321 IPR047217 -
Vifa4g03479 656 SUPERFAMILY ClpP/crotonase 103 311 IPR029045 -
Vifa4g03479 656 Gene3D - 503 620 - -
Vifa4g03479 656 Gene3D - 106 341 - -
Vifa4g03479 656 NCBIfam signal peptide peptidase SppA 356 569 IPR004635 GO:0006508|GO:0008233
Vifa4g03479 656 PIRSF Protease_4_SppA 50 655 IPR004634 GO:0006465|GO:0008233|GO:0016020
Vifa4g03479 656 PANTHER PROTEASE 4 68 653 - -
Vifa4g03479 656 CDD S49_Sppa_N_C 356 570 IPR047272 -
Vifa4g03479 656 SUPERFAMILY ClpP/crotonase 356 561 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03479 Vifa-Chr4 1089878747 1089929356 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03479 K04773 - gmx:100809623 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03479 4 1089878747 1089929356 Vifa4g03479 4 1089878747 1089929356 ECH