Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03458 ATGGGTTGGGCCATAGCTCTACACGGCGGCGCCGGCGACATTCCATATTCACTTCCACCGGAACGCCGCCTACCACGCGAAGAAGCCCTCCGTCACTGTCTACAAATCGGTGTCAAAGCTCTCAAATCCAACATGCCTCCTTTAGACGTCGTTGAACTTGTTGTTCGTGAGTTAGAGAACATTCCACACTTCAATGCTGGGAGAGGTTCTGTTCTCACCAACAAAGGGACTGTTGAAATGGAAGCTTCTATTATGGATGGTAACACTATGAAATGCGGTGCTGTTTCTGGTCTTACCACTGTTGTTAATGCAGTTTCTTTGGCTCGATTGGTTATGGATCGTACTCCTCATATTTATTTGGCGTTTGGTGGAGCTGAGGAATTTGCTAGACAACAAGGGGTTGAGACTTCAGATTCAAGCCATTTCATCACTCCAGAAAACATTGAAAGACTAAATCAGGCAAAAGATGCAAATAGAGTCCAGATTGATTATACCCAACCATTCCAAAACGATACTACCAAGAATGAAACAGAAGCACCATTTGCTAATGGTGATAGTCAAATTGGAACTGTTGGATGTGTAGCCGTTGACAGTAATGGGAATCTAGCTTCTGCAACATCAACTGGTGGATTGGTTAACAAAATGGCTGGTCGAATTGGTGACACGCCCATCATAGGTGCTGGAACGTATGCCAATGAATTTTGTGCCGTTTCTGCAACAGGAAAAGGGGAAGCAATAATCCGCGGGACCGTAGCGAGAGACGTGGCTGCAATGATGGAATTCAAAGGCCTTTCTTTAAAGGAAGCTGCTGATTGTGTTGTACATGAGCGCACACCAAAGGGCAATGTTGGTTTGGTTGCTGTGTCTGCTGCAGGTGAAGTTGCAATGCCTTATAATACAACAGGTATGTTTAGAGCATGTGCCACTGAAGATGGGTATTCTGAAATTGCAATTTGGCCAGATACCAAAGTGGAGTGA 978 0.4509 MGWAIALHGGAGDIPYSLPPERRLPREEALRHCLQIGVKALKSNMPPLDVVELVVRELENIPHFNAGRGSVLTNKGTVEMEASIMDGNTMKCGAVSGLTTVVNAVSLARLVMDRTPHIYLAFGGAEEFARQQGVETSDSSHFITPENIERLNQAKDANRVQIDYTQPFQNDTTKNETEAPFANGDSQIGTVGCVAVDSNGNLASATSTGGLVNKMAGRIGDTPIIGAGTYANEFCAVSATGKGEAIIRGTVARDVAAMMEFKGLSLKEAADCVVHERTPKGNVGLVAVSAAGEVAMPYNTTGMFRACATEDGYSEIAIWPDTKVE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03458 325 Pfam Asparaginase 3 319 IPR000246 GO:0016787
Vifa4g03458 325 Gene3D (Glycosyl)asparaginase 190 322 - -
Vifa4g03458 325 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 319 IPR029055 -
Vifa4g03458 325 CDD Asparaginase_2 4 312 - -
Vifa4g03458 325 PANTHER L-ASPARAGINASE 3 306 IPR000246 GO:0016787
Vifa4g03458 325 FunFam Isoaspartyl peptidase/L-asparaginase 190 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03458 Vifa-Chr4 1083528964 1083530648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03458 5 297 Miscellaneous Gene Families AT4G00590 25.688 3.25e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03458 K13051 - gmx:100799400 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03458 4 1083528964 1083530648 Vifa4g03458 4 1083528964 1083530648 ECH