Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03457 ATGCGACGACGGGCTGCCGATTATCGGCGCCCGGTTAGACGGAGGTTATCGTATTGGATCTGCCTTCTTCTCGCTTTCTCCTTCATTCTCGCTACCGTTTTGTTCGTCATTCAACATAATCATCATCAAGATCCGCTTCAATATTCTTTGCTCGAGAGAAATGCAAGAGTTGAACATTTTGCTAAAGAGAGTTTGAATTTTACTGAAGAAATTTTAAGTGTAACATCATTTTCTCGGCAGTTAGCGCAACAGATGATTCTGGCTAAGGCTTATGTGGTTATTGCCAAAGAACACAATAACCTTCACCTTGCCTGGCAGCTTAGCTCAAAGATCAGAAGTTGCCAACTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTCACACTGGAAGAAGCGGAGCCGATTATTAAAAGTCTTACTGCTCTAATTTTTAAGGCACAAGATATTCATTATGATATTGCAACTACAATAGTGACTATGAAATCTCATATTCAAGCTCTTGAAGAGCGTGCCAATGCAGCAACGGTTCAAAGTGCTGTGTTTGGTCAACTTGCAGCTGAAGCACTACCCAAGAGTCTACATTGCCTGAATGTGAAACTCGTGACTGACTGGCTCAAGGTGCCATCCTTACAGAAACTCGCAGATGAGAGGAAAAACTCTCCAAGGCTCACGGACAACAATCTATATCATTTCTGCTTATTTTCTGATAATGTACTGGCAACCTCTGTAGTTATCAACTCAACCGTCTACAATGCGGATCATCCGAAGCAATTGGTCTTTCACATTGTTACCAATGGAATCAATTACGGAGCAATGCAAGCATGGTTCCTTAGTAATGACTTTAAAGGAGCCACCGTAGAGGTACAAAACATTGAGAAGTTCCATTGGTTGAATGCATCTTATTCTCCAGTTGTCAAACAGCTCCACAATCCTGACTCACGAACCTTCTACTTTGGGCTGTATCAAGATGTAAATGCTGAACCGAAAATACGGAATCCCAAGTATTTGTATTTATTGAATCACCTTCGGTTTTATATCCCCGAGATTTATCCACAACTTGAAAAGGTTGTTTTTCTGGATGACGATCTTGTTGTCCAGAAAGATCTGACCCCTCTTTTCTCATTGGATTTGCACGGGAATGTGAATGGTGCAGTTGAAACTTGTCTTGAAGCATTTCATCGGTACTACAAGTATCTCAACTTTTCAAGTTCAATTATAAGCTCGAGATTTGATCCCCAGGCATGCGCGTGGGCATTTGGTATGAATGTTTTTGACTTGGTGGCATGGAGGAAGGCTAATGTGACGGCAAGATATCATTATTGGCAGGAGCAGAATGCCGATAGAACACTCTGGAAGTTGGGCACACTTCCTCCTGCTCTTCTGAGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTGAATATTGACAACCGCCTTATTGAAAGTGCTGCGGTTATTCACTTCAATGGGAACATGAAGCCGTGGCTGAAGGTAGCTATAGGCAGGTATAAGCCACTGTGGGACAAGTACATAAATCAAAGTCTCCCCCATCTTCAAAATTGTGTCCTGAGTTGA 1608 0.4235 MRRRAADYRRPVRRRLSYWICLLLAFSFILATVLFVIQHNHHQDPLQYSLLERNARVEHFAKESLNFTEEILSVTSFSRQLAQQMILAKAYVVIAKEHNNLHLAWQLSSKIRSCQLLLSKAAMTGEPVTLEEAEPIIKSLTALIFKAQDIHYDIATTIVTMKSHIQALEERANAATVQSAVFGQLAAEALPKSLHCLNVKLVTDWLKVPSLQKLADERKNSPRLTDNNLYHFCLFSDNVLATSVVINSTVYNADHPKQLVFHIVTNGINYGAMQAWFLSNDFKGATVEVQNIEKFHWLNASYSPVVKQLHNPDSRTFYFGLYQDVNAEPKIRNPKYLYLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSSSIISSRFDPQACAWAFGMNVFDLVAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKVAIGRYKPLWDKYINQSLPHLQNCVLS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03457 535 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
Vifa4g03457 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 533 IPR029044 -
Vifa4g03457 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 62 533 IPR029993 GO:0047262
Vifa4g03457 535 FunFam Hexosyltransferase 232 528 - -
Vifa4g03457 535 CDD GT8_like_1 230 523 - -
Vifa4g03457 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03457 Vifa-Chr4 1083525047 1083527307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03457 1 532 Glycosyltransferase AT2G20810 56.052 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03457 K13648 - gmx:100798878 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03457 4 1083525047 1083527307 Vifa4g03457 4 1083525047 1083527307 ECH