Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03447 ATGAGGTGGGAAAAGATTGAGGTTAAGGCGATAGGAAAAGAGGGTGATGGTGTCGAAGTGATATCTGGGCCAGGCAAAAGGTGGGGTCACACCTGTAACTCCATTAATGGTGGTAGACATATCTATGTCTTTGCTGGTTATGGCAAAGATAACTGCCAAACTAATCAAGTTCATGTCTTTGACACTGTGAACCAGACATGGAGTCAACCTGAAATAAAAGGCTCCCCACCTACTGCTAGGGACAGTCATACTTGCAGTGTTATTGGTCATAAACTGTTTGTCTTTGGGGGTACTGATGGGATGAATCCACTCAAGGATTTGCATATTTTAGACACTTCTTTGCAAACATGGGATTCTCCGGTTATACGAGGGCAAGGGCCAGAGGCACGTGAGGGTCATAGTGCGGCTGTTGTTGGGAAACGGCTTTACATTTTTGGTGGTTGTGGAAAATCCGCTGATAATAACAATGAGGTTTACTACAATGATCTTTACATACTGAATACAGAGACGCTTGTTTGGATGCGCCCTACAACATCAGGCACACCACCATCTCCTCGTGATAGCCACACTTGCTCATCGTGGAAGAACAAAATTATTGTGATAGGGGGTGAAGATGGGCATGATTATTATTTGTCTGATGTCCATATCCTTGACACTGATACTCTAATGTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCAACAGTTTCTTTTGGCAAGAACTTGTTCGTTTTCGGTGGATTTACCGACGCCCAAAATCTATACAATGACCTTTATATTCTTGATATTGATACTGGTATTTGGACAAACGTTACAACTACAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGGGTGGTGTTCTTGTGTTTATCGGCGGTTGTAATAAAAGTCTTGAAGCCCTGGATGATATGTATTACCTATATACAGGTATTGCTAGAGAAAGTGAACAGAGACCTGAGAAGTTATCTTTGAAGAAGCAATTGAAGCTGAAATGCCAAGAAGAACAAAATCTCATTCCTGGCCAAAATCAAGTTATGGTTGGATATGGAGTGGGTGCTGATATTGGCCAGGTCATGAATGTGTTGAGTTATAGCCAGCCAAATAGACCGAATATCCCAGTAAATCAATTGCTACCTTCTCATGGAAAGAAATCATTTGAAGCCAAGGTTACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGCGGAATTCTGTTTTTAAACAAACAAAACCCTCTTCACTCATCCGCTCATGCTCTTAATAGGAAAAGGACTGCTGGTGAAATTGATGGTGTCATCTCAAATGGTACACATTCAAATATATTAAAGACTCCTAAAGTGCTGAAGCAAAATCAAATGGAAAATAGACATCCAGAATCTCTCGGTCACAGTTCTGATGCTGTCATTGCACTTGCAGCAAGCAATCCAATAACTGCCAATGCATCTGTTAACCATAAGGTTGAATCAGAAGCTGCTTCTTTGAATCAAAATGCTGAACAAATTGAAACACCACCAACCTTGGGGGAAAACTTGAAAAATGATGGAGCAAATCATGTGACAAATTCCAGAGTTGAAGCCCAAACCAATGTTCAAACAAATGTGGTGATTCTTAACTTAGAAGCTTCAAGTCATGATAAAAATAACGATGCACCAAACTGCAACACAGAATTTCTGAAACCTGCGACAGCTGAGAGTGCTGTGAATTTCTCAAATCAAGGTGCAGTGGTGGATTCTACAACTCCAAGAACAGGAGAATGCAATGAACCAACAAAATGA 1848 0.4102 MRWEKIEVKAIGKEGDGVEVISGPGKRWGHTCNSINGGRHIYVFAGYGKDNCQTNQVHVFDTVNQTWSQPEIKGSPPTARDSHTCSVIGHKLFVFGGTDGMNPLKDLHILDTSLQTWDSPVIRGQGPEAREGHSAAVVGKRLYIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLMWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYILDIDTGIWTNVTTTTNCPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLKKQLKLKCQEEQNLIPGQNQVMVGYGVGADIGQVMNVLSYSQPNRPNIPVNQLLPSHGKKSFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNPLHSSAHALNRKRTAGEIDGVISNGTHSNILKTPKVLKQNQMENRHPESLGHSSDAVIALAASNPITANASVNHKVESEAASLNQNAEQIETPPTLGENLKNDGANHVTNSRVEAQTNVQTNVVILNLEASSHDKNNDAPNCNTEFLKPATAESAVNFSNQGAVVDSTTPRTGECNEPTK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03447 615 PANTHER KELCH REPEAT DOMAIN 2 118 - -
Vifa4g03447 615 Pfam Galactose oxidase, central domain 39 88 - -
Vifa4g03447 615 Gene3D - 153 374 IPR015915 GO:0005515
Vifa4g03447 615 Pfam Kelch motif 185 229 IPR011498 GO:0005515
Vifa4g03447 615 SMART kelc_smart 197 247 IPR006652 GO:0005515
Vifa4g03447 615 SMART kelc_smart 91 140 IPR006652 GO:0005515
Vifa4g03447 615 SMART kelc_smart 40 90 IPR006652 GO:0005515
Vifa4g03447 615 SMART kelc_smart 248 294 IPR006652 GO:0005515
Vifa4g03447 615 MobiDBLite consensus disorder prediction 596 615 - -
Vifa4g03447 615 Gene3D - 2 152 IPR015915 GO:0005515
Vifa4g03447 615 Pfam Kelch motif 127 170 - -
Vifa4g03447 615 SUPERFAMILY Galactose oxidase, central domain 19 228 IPR011043 -
Vifa4g03447 615 Pfam Galactose oxidase, central domain 236 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03447 Vifa-Chr4 1078359663 1078364668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03447 54 313 Acyl Lipid Metabolism Gene Families AT3G05420 31.022 5.75e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03447 - - cam:101509662 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03447 4 1078359663 1078364668 Vifa4g03447 4 1078359663 1078364668 ECH