Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03443 ATGGCAATGCAGGAAGGGAGCGCTTCTCCTAGTCCTCAAGTTGTTGGCAATGCTTTTGTGGAGCAGTATTATCATATTCTGCATCAATCGCCTGATTTGGTGCACAGATTCTATCAGGATTCAAGTCTCTTGAGCAGATCAGACAGCAATGGTGTCATGAAGACTGTAACAACCACAAAAGCAATCAATGAAACAATTGTTTCCCTGAACTATGAAGATTGTACTGCAGAAATAAAAACTGCAGATACTCAGGAGTCCCATGAGAATGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCGCACAGACATTCTTTTTGGCTCCACAAGACAAAGGATATTATGTCTTAAATGATGTTTTTAGATATATTGAGGAGAATGATGCCCCACAGTTAAGTTCTGCTTCAATAAATGTTACCAATGAAAATTCCGAGGCAAATCACATACCAGAGTCAGAGGATATGCACCCTTCTGAACATCTTGTGGAAGACCCTGCAACATCTGTAGACGGTGAAAACTTTAATAATGGTGCTGAAGTTTATCATCCTCAGGAAACCAACGAAGATGGGTCAGTTATTGATGAAGAGGTTGTCGTACCGATCACTGATTTAAGTGAGAATGATATTGTTACAATTCATGATTCAACTCCTGCAGTCCAGGATGACGCACGAAAGACATCATATGCATCCATAGTAAAAAGTAAAACAGCATCTGGTCAAGTCTATGTTCCCAACCGAGCTGCAAGAGTGGCATCTGCTAAATCCAATCAACAATGGCATGCTACAGCGAAATCTACTTCTGGGCCTGAGACATTTGCTCCTAGTAGTGATAGTGCACAAGGGAGTAGTGATGTTCCTGAATCAGCTGAAGGTCATTCTATATACATACGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGATGAGGTTTTTAAGAAATTCGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGCTTTTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGCTCTGTGCAAAGTGCACTTAAGGCGTCACCTATCACTGTTGGTGAGCGACAAGCTGTTATTGAGGAAAAGATATCCACTACACGAGTCAGCGATGGCGGAAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAACGAGGGTTTCCGGGGGCGCGGGAGATTTGGTGGTGGACGAGGCTATGGAAGAAACGAATTCAGAAACCAAGGGGAATTCTCAGGACGGCCTAGGAGTTCTCATCGTCCAAGTCAAAATGGAGGTGGGCGTGGTGGACGTCATGGTGCAGGGAACCATAATGTTACACCATCTACTTCAGAGTGA 1374 0.4301 MAMQEGSASPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADTQESHENGVIVLVTGCLTGKDNVRRKFAQTFFLAPQDKGYYVLNDVFRYIEENDAPQLSSASINVTNENSEANHIPESEDMHPSEHLVEDPATSVDGENFNNGAEVYHPQETNEDGSVIDEEVVVPITDLSENDIVTIHDSTPAVQDDARKTSYASIVKSKTASGQVYVPNRAARVASAKSNQQWHATAKSTSGPETFAPSSDSAQGSSDVPESAEGHSIYIRNLPFNATIELLDEVFKKFGPIKHGGVQVRSSKHGFCFGFVEFEELSSVQSALKASPITVGERQAVIEEKISTTRVSDGGRGRYPSGRGGFRNEGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRPSQNGGGRGGRHGAGNHNVTPSTSE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03443 457 SUPERFAMILY RNA-binding domain, RBD 296 406 IPR035979 GO:0003676
Vifa4g03443 457 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 11 431 IPR039539 -
Vifa4g03443 457 MobiDBLite consensus disorder prediction 379 457 - -
Vifa4g03443 457 CDD NTF2 11 133 IPR018222 -
Vifa4g03443 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 385 IPR000504 GO:0003723
Vifa4g03443 457 FunFam Ras GTPase-activating protein-binding protein 1 288 415 - -
Vifa4g03443 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 359 IPR000504 GO:0003723
Vifa4g03443 457 SMART rrm1_1 301 372 IPR000504 GO:0003723
Vifa4g03443 457 MobiDBLite consensus disorder prediction 261 297 - -
Vifa4g03443 457 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Vifa4g03443 457 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Vifa4g03443 457 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Vifa4g03443 457 MobiDBLite consensus disorder prediction 261 295 - -
Vifa4g03443 457 Gene3D - 281 381 IPR012677 -
Vifa4g03443 457 Gene3D - 4 135 - -
Vifa4g03443 457 MobiDBLite consensus disorder prediction 422 436 - -
Vifa4g03443 457 FunFam Nuclear transport factor 2 family protein 6 135 - -
Vifa4g03443 457 CDD RRM_SF 302 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03443 Vifa-Chr4 1077360612 1077364237 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03443 K24983 - gmx:100801253 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03443 4 1077360612 1077364237 Vifa4g03443 4 1077360612 1077364237 ECH