Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03435 ATGGCAGAAATCCGAAGACCTTCATCTTCATCAACCGTTCTCGACACTCTTGGCGAAGAAATCGTTAGAATCATCACTCCCGTTTCAATCTGCATGTTCCTTGTTGTAATCCTAGTCTCAATTCTCAACACAAACGATTCCCCAACAATCTCCACCATAGCCAACATAGCATACGACGAAACAACCTCAGATTCTTCCTGGGACAAATTCCTCGGCGCACTTCTAAACTCCTTATCCTTCGTAGTCGTTGTAACCTTCACCACTTTCTTCTTAGTCCTCCTCTTCTATTTCCGATGTATCAGGTTCTTAAAACTCTACATGGCTTTCTCTTCTTTCGTCGTTTTAGGTTTCCTCGGAGGCGAAATTTCTGTGTTTTTGATTCAACATTTTAGTACTCCAATTGATTGTATAACGTTTTCAATTGTTTTGGTTAATTTCGCTGTTGTTGGTGTTTGTGCTGTGTTTATGTCGAAAATGGCCATTTTTGTTACACAAGGGTATTTGGTTGTTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACATGGGCCATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCTGTTTTGTTGCCTGTTGGGCCTTTAAGGCTTTTGGTTGAACTTGCCATTTCAAGAGATGAAGAGATTCCAGCTTTGGTTTACGAGGCTAGGCCGGTGAGTAATGATAGGTTGGATGATGTTGCGGCTCGGAGGAGGTTATGGCGAGAGCGGAGGATTGAGAATTCAAATTTGATAACCGAGAATGAAAATCCTGTGTTGGGTGGTAGTGGACTCAATGCTGAACAATCACACTCCAATCAAGACGCGAACGCTGTTGTTAGTTCAAATTCAAACAGAAATGCTTCGAATTTGGATTCTAGTAGCTCTTATGGGCCTTGTAACTTGGTAAAAGCGGAAGAGGGGCGAGTGCAGGTTCGAGAAACTGATTCAGATCTTGCCACGCCGTTGCTTGGTCATGGAAATGTGCGGGTTCCTATAGGAGAAGATGCTGCGTCGAATGAGAATTTGATGTTGGAGGGAATTGGATTGGCTTCGTCCGGTGCAATCAAATTGGGGCTTGGTGATTTTATCTTTTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACAGTGTATGCATGTTATCTCGCAATTATTGCTGGTCTCGGCATAACTTTGATGCTTTTGGCTTTTTATCAGAAAGCCTTGCCTGCACTACCTGTGTCAATAGCACTGGGTGTGTTGTTTTATTTCTTGACTAGATTATTACTTGAAGTATTTGTAGTACAATGTTCATTGAATCTCTTAATGTTCTGA 1347 0.4172 MAEIRRPSSSSTVLDTLGEEIVRIITPVSICMFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFTTFFLVLLFYFRCIRFLKLYMAFSSFVVLGFLGGEISVFLIQHFSTPIDCITFSIVLVNFAVVGVCAVFMSKMAIFVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVSNDRLDDVAARRRLWRERRIENSNLITENENPVLGGSGLNAEQSHSNQDANAVVSSNSNRNASNLDSSSSYGPCNLVKAEEGRVQVRETDSDLATPLLGHGNVRVPIGEDAASNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLMF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03435 448 SMART psh_8 71 434 IPR006639 GO:0004190|GO:0016020
Vifa4g03435 448 MobiDBLite consensus disorder prediction 262 302 - -
Vifa4g03435 448 FunFam Presenilin 340 439 - -
Vifa4g03435 448 Pfam Presenilin 18 438 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vifa4g03435 448 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vifa4g03435 448 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vifa4g03435 448 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vifa4g03435 448 Gene3D Presenilin 349 440 IPR042524 -
Vifa4g03435 448 PANTHER PRESENILIN 10 448 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03435 5 448 Miscellaneous Gene Families AT2G29900 59.732 2.85e-158 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03435 K04505 - gmx:100780823 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03435 4 1073005225 1073006571 Vifa4g03435 4 1073005225 1073006571 ECH