Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03430 ATGAACTCCGAGAGTGACGAAAACACAAGCACGATCATCTCTCGACGCAACGTTGGCTTACTCTACGACGAAAGAATGTGTAATCACTTCGATCCCGTGGACGATTACCATCCCGAAACTCCGAATCGCATTAGATCTATCTGGAACAAGCTTCAAACCACCGGCATTACCGACCGTTGTGTGATTTTGGATGCTAAAGAAGCTGAAGATAAACATTTACTATCAGTGCATTCCGTAAAGCATGTGAATCAGATTAAGAAGATAAGCTCTAAAAGTTTTAATTCGAGGAATATGATTGCGGCAAAACTTGGTTCTATATATTTCAATGAAGGTTCAACAGAAGCTGCTTATCTTGCTGCTGGCTCCACTATTGAGGTTGCTAAAAGAGTAGCAAGCAAGGAATTGCATTCAGCTGCTGCTATTGTTAGGCCTCCAGGTCATCATGCAGAGCATAATGAAGCCATGGGATTTTGTCTGTTCAACAATGTGGCAATTGCTGCATCTTATCTCTTAGATAAAACTCCAGAATTTGGTGTAAAGAAAATTTTAATTGTTGACTGGGACGTCCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGATTCTCGAGTGTTATTCTTCTCCGTTCATAGGCATGAATTTGGGAGTTTTTATCCAGCAAATGATGATGGATTTTATGACAAGATTGGAGAAGGAGCAGGTGCTGGATACAATATAAATGTGCCATGGGAGAATGGTGGATGTGGTGATGCAGACTATTTGGCAGCATGGGACCACATCTTGCTCCCTGTTGCCAAAGAATTTAATCCAGACATAATAATGATTTCTGCTGGATTTGATGCAGCCGTTGGAGACCCTTTGGGTGGATGTCGTATCACACCATTTGGTTATTCTGTCATGTTGAAAAAGCTGATGGATTTTGCTGAAGGTAGAATTGTACTGGTTTTAGAAGGAGGGTATAATCTTGACTCCATTGCAAAATCAACACATGCTTGTTTGGAAGTTTTGCTTGAAGACAAGCCTCTTATGGGCTCATCTGAGACCCATCCATTCGAGTCTACATGGCGTGTGATCCAAGCGGTTCGCCAGGAGTTAAGTCCCTTTTGGCCTACACTTGCGTGTGAAATACCACAAAAAATAATTGGTCAAACGGCACCTCCTCCGCATACTCTTTTGTCAAGCTCTGACTCTGAGACCGAAGATGACAAAGCACTCAAATTAAAAAATATTGCTGACCACCTTTCCAAGCTTAAAGTTGATGCAGATGAAGAATGTGATGCTTCTTGTTCCTGGCGATCCGAATTGTCAAATGTGTACATATGGTATGCTTCATATGGCTCAAATATGTGGAGACCAAGATTTGATTGCTACATAGCAGGTGGACAGGTGGAAGGTATGCAGAAGACCTGCCCTGGTTCTCGAAACAAAACTCTTCCGAATGAGATCCTTTGGAAGACTTTCCCCTGTCGTTTATTTTTTGGACGTGATTCCTCATATTCATGGGGTCCCGGAGGTGTTGCTTTTCTTAATCCTCAGACAAACTCACAGCAAAAGACCTACATGTGCCTGTACAAAATTTCGTTCGAGCAGTTCAATGATGTTTTATTTCAGGAAAATGTTTTAAGCCTTGATGCGAGTTCTTCTTTATTTGATATGACTACTCTGAATGCCATATCTAATAAGGAATTCGGTTCTCAGGAGGTTGTCAAGGATAGTTGGTATGGCAATGTTATCTACTTAGGAAAGGACCAGGACATTCCAATAGTTACTATGACGTGTTCGGGTCTTAATATTGAGCGCTTCAAATCTGGGAAGCTACCATTGCGCCCGCCTAATCAATCGTATGCCAATACCTTAATAAAAGGGTTGGTAGAGGGAGAACAGCTCTCTGAGGAGGAAGCCATTGCTTACATAGATGCTGCTGCTGCTGCTGAGTTGTTGTGA 1947 0.4191 MNSESDENTSTIISRRNVGLLYDERMCNHFDPVDDYHPETPNRIRSIWNKLQTTGITDRCVILDAKEAEDKHLLSVHSVKHVNQIKKISSKSFNSRNMIAAKLGSIYFNEGSTEAAYLAAGSTIEVAKRVASKELHSAAAIVRPPGHHAEHNEAMGFCLFNNVAIAASYLLDKTPEFGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEFGSFYPANDDGFYDKIGEGAGAGYNINVPWENGGCGDADYLAAWDHILLPVAKEFNPDIIMISAGFDAAVGDPLGGCRITPFGYSVMLKKLMDFAEGRIVLVLEGGYNLDSIAKSTHACLEVLLEDKPLMGSSETHPFESTWRVIQAVRQELSPFWPTLACEIPQKIIGQTAPPPHTLLSSSDSETEDDKALKLKNIADHLSKLKVDADEECDASCSWRSELSNVYIWYASYGSNMWRPRFDCYIAGGQVEGMQKTCPGSRNKTLPNEILWKTFPCRLFFGRDSSYSWGPGGVAFLNPQTNSQQKTYMCLYKISFEQFNDVLFQENVLSLDASSSLFDMTTLNAISNKEFGSQEVVKDSWYGNVIYLGKDQDIPIVTMTCSGLNIERFKSGKLPLRPPNQSYANTLIKGLVEGEQLSEEEAIAYIDAAAAAELL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03430 648 PANTHER HISTONE DEACETYLASE 9-RELATED 17 405 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Vifa4g03430 648 SUPERFAMILY Arginase/deacetylase 15 371 IPR023696 -
Vifa4g03430 648 Pfam Histone deacetylase domain 37 336 IPR023801 -
Vifa4g03430 648 PRINTS Histone deacetylase superfamily signature 144 167 IPR000286 -
Vifa4g03430 648 PRINTS Histone deacetylase superfamily signature 271 281 IPR000286 -
Vifa4g03430 648 Gene3D Histone deacetylase domain 11 385 IPR037138 -
Vifa4g03430 648 FunFam Histone deacetylase 15 11 388 - -
Vifa4g03430 648 Gene3D - 427 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03430 Vifa-Chr4 1071295965 1071331967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03430 K11406 - gmx:100788831 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03430 4 1071295965 1071331967 Vifa4g03430 4 1071295965 1071331967 ECH