Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03405 ATGGTAAAGAAGATCTGTGGAATTGGAGCTGGATATGTAGGGGGTCCAACGATGGCGGTTATAGCCCTCAAATGTCCTTCGATTGAGGTAGCTGTTGTTGACATCTCTCACCCCAGGATATCAGCTTGGAACAGCGACAAACTCCCGATCTACGAACCCGGCTTAGAACAAATTATACAACAATGTAGAGGAAAGAATCTCCTCTTCAGTACTGATGTAGAAAAACATGTTTTTGAGGCTGATATAATCTTTGTTAATGTTAACACGCCAACGAAAACAGGAGGCCGTGGAGCTGGCAAAGCTGCAGATTTAACTTATTGGGAAAGTGCGGCGAGGATGATAGCCGACGTTTCAAGATCAAACAAGATTGTTGTCGAGAAATCAACTGTTCCGGTTAGAACAGCTGAAGTGATTGAGAAAATTCTAGTTCACAATAGCAATGGCAAGGTCGAGTATCAAATTTTGTCAAATCCTGAATTTCTTTCCGAAGGAACTTCTATTCAGGATCTTCTAAATCCTGATAGGGTTCTAATCGGAGGAAACGATAGTCTTAAAGGTCAAGAAGCAATTCAAAAACTGAAAGCTATATATGCTAACTGGGTGCCTGAAGACAGAATTATAACTACAAATGTTTGGTCTGCTGAACTCTCTAAGTTAGCTGATAATGCTTTTTTGGCTCAAAGGATTTCATCTATTAATGCTATGTCGGCTTTATGCGAGTCTACAGTTTCAGGTAAGAAGGTTGCTGTTTTAGGATTTTCCTTTAAGAAAGATACTAGTGATACTAGGAAAACTCCTGCAATCGATGTTTGCAAAGGTCTTTTGGGGGATAATGCTTGTTTGAGCATTTATGATCCGCGGGTTAGTGAAGAACAGATTCGAAGAGATTTGTCTATGAATGAGATTCCATGGGACAATTCAGTCATGGTTGAGGCAATGAGGTTCGATGGTACGAAACAGGTTAGTGTGTATGAGGATGTTTACGAGGCAACTAAAAATGCTCATGGGATATGTGTTCTTACAGAATGGGATGAGTTCAAGGAAATTGATTATCAAAGAGTGTTTGATAGTATGGAGAAACCAGCATTTGTTTTTGATGGTAGAAATGTTTTGGATGTTCATAAGTTGAGGGAGATTGGGTTTATTGTATACTCAATTGGGAAGCCATTGAAGCAGTGGCAGAGTTACTAG 1191 0.3988 MVKKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHPRISAWNSDKLPIYEPGLEQIIQQCRGKNLLFSTDVEKHVFEADIIFVNVNTPTKTGGRGAGKAADLTYWESAARMIADVSRSNKIVVEKSTVPVRTAEVIEKILVHNSNGKVEYQILSNPEFLSEGTSIQDLLNPDRVLIGGNDSLKGQEAIQKLKAIYANWVPEDRIITTNVWSAELSKLADNAFLAQRISSINAMSALCESTVSGKKVAVLGFSFKKDTSDTRKTPAIDVCKGLLGDNACLSIYDPRVSEEQIRRDLSMNEIPWDNSVMVEAMRFDGTKQVSVYEDVYEATKNAHGICVLTEWDEFKEIDYQRVFDSMEKPAFVFDGRNVLDVHKLREIGFIVYSIGKPLKQWQSY 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03405 396 FunFam UDP-glucose 6-dehydrogenase 1 210 - -
Vifa4g03405 396 PIRSF UDPglc_GDPman_dh 240 388 IPR017476 GO:0016616
Vifa4g03405 396 PIRSF UDPglc_GDPman_dh 3 244 IPR017476 GO:0016616
Vifa4g03405 396 Gene3D - 211 241 - -
Vifa4g03405 396 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 186 IPR001732 GO:0016616|GO:0051287
Vifa4g03405 396 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 249 372 IPR014027 GO:0016616|GO:0051287
Vifa4g03405 396 Gene3D - 242 394 - -
Vifa4g03405 396 FunFam UDP-glucose 6-dehydrogenase 211 242 - -
Vifa4g03405 396 PIRSF UDPglc_DH_bac 241 391 IPR028357 GO:0000271|GO:0003979
Vifa4g03405 396 PIRSF UDPglc_DH_bac 3 244 IPR028357 GO:0000271|GO:0003979
Vifa4g03405 396 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 242 IPR008927 -
Vifa4g03405 396 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 242 IPR014026 GO:0016616|GO:0051287
Vifa4g03405 396 SMART UDPG_MGDP_dh_C_a_2_a 249 373 IPR014027 GO:0016616|GO:0051287
Vifa4g03405 396 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 3 242 IPR028356 GO:0003979
Vifa4g03405 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Vifa4g03405 396 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 242 384 IPR036220 -
Vifa4g03405 396 Gene3D - 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03405 Vifa-Chr4 1063730862 1063732295 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03405 K00012 - gmx:100781197 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03405 4 1063730862 1063732295 Vifa4g03405 4 1063730862 1063732295 ECH