Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03368 ATGGCTTCAGCTACATCTTCTCTATGCTCACCTACCCTCCAATCTCAGATCAATGGACTCTCCCTTCGCAAAACTTCTCTTCTCCATCCCCCTTCTCTCACTTTCTCCAGGAGAAAAGTTTCAACCGTGGTTAAGGCCTCATCTCGTGTTGACAAGTTTTCCAAAAACGATATCATTGTTTCTCCATCTATTCTTTCCGCTAACTTTGCAAAATTGGGAGAACAGGTAAAAGCAGTGGAGTTGGCTGGTTGTGATTGGATTCATATTGATGTTATGGACGGTCGCTTTGTTCCAAACATTACAATTGGACCTCTTGTGGTTGACGCGTTACGCCCTGTAACAGATTTACCTTTGGATGTACATCTGATGATCGTAGAACCAGACCTGCGGGTTCCAGATTTCATCAAAGCAGGAGCTGACATAATTAGTGTTCATTGTGAACAGTCTTCCACTATCCATTTGCATCGTGCTGTTAATCAAGTGAAAAGTTTGGGAGCGAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCACTAAGTGCAATAGAATATGTCCTTGAGGAGATTGATTTGGTCTTAATTATGTCCGTAAACCCTGGCTTTGGAGGCCAAAGTTTTATTGAGAGTCAAGTAAAGAAAATTGCTGAGTTAAGAAGATTGTGCGTGGAGAAGGGTGTGAATCCATGGATTGAAGTCGATGGTGGGGTTACCCCAGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCACTAGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAGAGGGATCAAAGCTAGCAAAAGACCTGAACCAGTTGCTGTGTGA 846 0.435 MASATSSLCSPTLQSQINGLSLRKTSLLHPPSLTFSRRKVSTVVKASSRVDKFSKNDIIVSPSILSANFAKLGEQVKAVELAGCDWIHIDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDLRVPDFIKAGADIISVHCEQSSTIHLHRAVNQVKSLGAKAGVVLNPGTPLSAIEYVLEEIDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKASKRPEPVAV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03368 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 191 213 IPR000056 GO:0005975|GO:0016857
Vifa4g03368 281 Gene3D Aldolase class I 48 277 IPR013785 -
Vifa4g03368 281 Pfam Ribulose-phosphate 3 epimerase family 60 258 IPR000056 GO:0005975|GO:0016857
Vifa4g03368 281 FunFam Ribulose-phosphate 3-epimerase 55 277 - -
Vifa4g03368 281 NCBIfam ribulose-phosphate 3-epimerase 60 271 IPR026019 GO:0004750|GO:0006098
Vifa4g03368 281 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 58 273 IPR000056 GO:0005975|GO:0016857
Vifa4g03368 281 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 273 IPR026019 GO:0004750|GO:0006098
Vifa4g03368 281 SUPERFAMILY Ribulose-phoshate binding barrel 52 274 IPR011060 -
Vifa4g03368 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 87 101 IPR000056 GO:0005975|GO:0016857
Vifa4g03368 281 CDD RPE 59 271 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03368 Vifa-Chr4 1053942104 1053944656 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03368 K01783 - gmx:100817791 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03368 4 1053942104 1053944656 Vifa4g03368 4 1053942104 1053944656 ECH