Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03357 ATGATACCTCAGAATGTGCAACGATCCTCCGAAAGACTCAATGATATCTTGAAGGACGCTATGATATCTTCTGAGGGTCACGTAGTATTAGTATCACCACTACCAATACCATTCGTCTTCGACCCTCAGCGGAGATTTCAAGCCCATCTTCCCATTTATATCTCTCTCTTTCTCTCCCTCAACTTCTCCTCCCAATTCCCATTACCATTCCCAGAGGTTGAGATGGCGGCAGCAGCATCAGCAGCTACTTTTTCTATTGGAACCGCCCAAACAGGGAGGTTACTTCCTCAATCAAACCCTTTTGGTTTCAAATTCAATTCCCAGGTTAATTTCAGAAACTTCTCTGGCCTCAAGGCCATGTCATCTGCCATGTCATCTTTCTCCGGCAATGAAACTTGTGCTGCTCTTCGTGCAACTTTTGCTCCCAAAGCTGTAAAAGAAAACCGAAACCTCAACCACAACTTGCAGCCACAGGCATCCTACAAAGTAGCGGTTCTCGGTGCTGCGGGAGGGATTGGTCAGCCACTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCCGACCTGCATCTCTATGATATCGCCAACGTTAAGGGAGTTGCAGCTGATATTAGTCATTGCAACACTCCTTCAAAAGTTGTGGATTTCACGGGAGCTGCTGAGTTAGCGAATTGTTTGAAAGGTGTTGATGTTGTTGTTATACCCGCCGGTGTTCCTAGGAAACCTGGCATGACTCGTGATGACCTTTTCAACATTAATGCTGGTATAGTCAGAGACCTGGTCTCCGCCGTTGCAGATAATGCCCCTGGGGCTTTTATTCATATTATCAGCAATCCGGTGAATTCTACTGTGCCTATTGCTGCTGAAATTCTGAAACAAAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTAGTACGCTTGATGTTGTGAGGGCAAACACTTTTGTTGCACAGAAGAAGAACCTGAGGCTGATTGATGTAGATGTTCCTGTTGTTGGGGGCCATGCTGGGATTACCATTCTTCCTCTATTGTCAAAGACAAAACCCTCAACGAGTTTCAGTGATGAAGAGATTGAGGAGCTAACTGTCAGGATTCAAAATGCTGGAACTGAAGTTGTTGAGGCAAAAGCTGGTGCAGGGTCTGCAACTTTGTCAATGGCTTATGCAGCAGCTAGATTTGTTGAATCGTCTCTTCGTGCGCTTGATGGAGATGCTGATGTGTACGAATGCTCATATGTACAGTCAGATCTGACCGACCTTCCGTTTTTTGCTTCAAGGGTGAAGATTGGTAGGAAAGGAGTCGAGGCTTTAATTCCAACTGATCTCCAAGGATTGAGTGAGTACGAGCAGAAGGCTTTGGAAGCACTCAAGCCAGAACTTAAGGCCAGTATCGAGAAGGGGGTTGCTTTTGCTCAAAAGCAAACTGTTACCGCTTAA 1440 0.4562 MIPQNVQRSSERLNDILKDAMISSEGHVVLVSPLPIPFVFDPQRRFQAHLPIYISLFLSLNFSSQFPLPFPEVEMAAAASAATFSIGTAQTGRLLPQSNPFGFKFNSQVNFRNFSGLKAMSSAMSSFSGNETCAALRATFAPKAVKENRNLNHNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVVDFTGAAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNAPGAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSTSFSDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGVAFAQKQTVTA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03357 479 PANTHER MALATE AND LACTATE DEHYDROGENASE 148 475 - -
Vifa4g03357 479 SUPERFAMILY LDH C-terminal domain-like 306 472 IPR015955 GO:0003824|GO:0016616
Vifa4g03357 479 FunFam Malate dehydrogenase 306 474 - -
Vifa4g03357 479 Gene3D - 159 305 - -
Vifa4g03357 479 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 307 471 IPR022383 GO:0016616
Vifa4g03357 479 Gene3D - 306 477 IPR015955 GO:0003824|GO:0016616
Vifa4g03357 479 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 305 IPR036291 -
Vifa4g03357 479 Pfam lactate/malate dehydrogenase, NAD binding domain 162 304 IPR001236 GO:0016491
Vifa4g03357 479 CDD MDH_glyoxysomal_mitochondrial 161 472 IPR010097 GO:0006099|GO:0030060
Vifa4g03357 479 FunFam Malate dehydrogenase 159 305 - -
Vifa4g03357 479 NCBIfam malate dehydrogenase 162 473 IPR010097 GO:0006099|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03357 Vifa-Chr4 1050670545 1050674339 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03357 K00026 - gmx:100783173 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03357 4 1050670545 1050674339 Vifa4g03357 4 1050670545 1050674339 ECH