Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03317 ATGAACTCCATGACGACGCCGTTTCAACAGGGCCCGCCCCAGACAGTGAGGAGATTGGTGGTGGAAGTTGTAGACGCGCGCAACCTTCTACCCAAAGATGGTCAAGGAAGTGCAAGCCCTTATGTTGTAGGGGACTTCGATGGTCAGAGAAAACGAACCACCACAAGGTTCAAGGAGCTGAACCCAGTTTGGAATGAAACGCTCGAGTTTATTGTTTCTGACCCGGAGAATATGGAGTTTGAAGAGCTTGAAGTTGAGGTTTACAATGATAAAAAATTTGGTAATGGTAGTGGACGGAAAAATCATTTTCTGGGTAGGGTTAAGCTCTATGGAACGCAATTCTCAGGTAGAGGAGAAGACGCTCTGGTTTACTATACGCTAGAGAAGAAGAGTGTTTTCAGTTGGATTAGAGGTGAAATCGGTCTCAAGATTTATTACTATGATGAGTTGTTGCAGCAAGAAGAAAATCAACAACAGCAACAAGAGCAGCCACCACCGCAGGAGGAGGAGAGACCTTCCGGGATGGAGCAAGAGAGAAACAGACCACAGATGATGGTTGAGGAGGGAAGGGTTTTTCAGGTTAATGGGCCGATGGAGCATTGTGTTCCACTTCCAGATGGTCCTCCTTCGCCTCGTGTTATGGTTGTTGAGGAATCACCATCTCCGGTGGTTCGTGTTCAACAGGATCCACCTCTGCCGGAGATGTATGGTCCTCCGGAACCGGAAATGCAGTACCACCAGCCGGAAGTGAGGAAAATGCAGGCAGTTAGAAATGATAGAGTGAAGATTATGAAGAGACCTAACGGTGACTACGCGCCGAAAGATATCTCCGGCAAGAAACCAAACGGTGAGTCTGAGAGGATTCATCCCTACGATCTAGTGGAACCAATGCAGTATCTGTTTGTCAGAATCGTAAAGGTTCGTGGTCTTAATCCTCCAACTGAAAGCCCATTCGTGAAGGTTAGAACGTCTAGCCACTACGTGAGATCAAAGCCTGCAAGTTATCGTCCAAACGAGCCAAACGATTCACCGGAGTGGAACCAGGTTTTTGCCCTAGGTTACAACAAGACCGACGCAGCTAGTGCCACGTTAGAGATTTCCGTTTGGGATTCACCTACAGAGCAATTTCTCGGTGGAGTTTGTTTTGATCTCTCTGATGTACCTATCCGAGATTCTCCAGATAGTCCTCTTGCTCCACAATGGTACCGTCTCGAAGGAGGTGCGGCCGAACAAAACTCCGGCAGAGTCTCCGGCGATGTTCAGTTATCCGTTTGGATCGGAACTCAATCTGACGACGCATTTCCAGAAGCATGGAGCTCAGATGCACCGTACGTGGCACACACTCGCTCCAAGGTTTACCAATCACCTAAGCTTTGGTACCTTCGCGTTACAGTAATGGAAGCACAAGACCTGAATCTGACTCCAAATCTACCTCCATTAACTACACCGGAAATAAGAGTTAAAGTTCAATTAGGGTTTCAATCACAGAGAACTAGACGAGGCTCAATGAACCATCACAGCATGTCGTTTCACTGGCACGAAGACCTTCTCTTCGTCGCCGGTGAGCCTCTAGAAGATTCCATGGTCCTTCTGGTAGAAGATCGAACCACCAAGGAAGCGGCACTCCTTGGCCACGTCGTGATTCCTCTTACTTCAATTGAACAGCGAATAGACGATCGCCACGTGCCAGCCAAATGGTTCCCACTGGAAGGTGGATCCTACTGCGGCCGTGTCCACCTCCGCCTCAACCTCGAAGGTGGATATCACGTGCTAGACGAAGCGGCGCACGTGTGCAGCGATTTCCGACCCACTGCAAAATCTCTCTGGAAACCTCCCGTTGGAATTCTTGAACTTGGAATCCTAGGCGCTCGTGGTTTACTCCCAATGAAATCCAAGGGTCCAGGAAAAGGGTCCACGGATGCTTACTGTGTAGCGAAGTATGGTAAAAAATGGGTCCGAACCCGTACAGTAACGGATAGTTTCGACCCACGCTGGAACGAGCAGTATACATGGCAGGTTTACGACCCATGCACCGTTTTGACCGTTGGTGTTTTTGACAACTGGCGTATGTTTGCTGACGTGTCAGAAGAAAAACCTGATTGCCGTATAGGTAAAGTTCGTATTCGAGTTTCTACTCTAGAAAGCAACAAAATCTATACAAGTTCATATCCATTACTGGTTTTAACTCGAACCGGTTTAAAAAAAATGGGTGAAATCGAATTAGCGGTTCGGTTCGCATGCCCCTCGTTTCTCCCCGACATGTGTGCAGTTTACGGCCAACCATTACTTCCAAAAATGCACTACATCCGCCCACTCGGGGTGGCTCAACAGGAAGCTCTCCGTGGAGCAGCCACCAAAATGGTGGCACAGTGGCTGGCGCGGTCTGAGCCTCCAATGGGACATGAAGTTGTTCGTTACATGTTGGATGCTGATTCACACGCTTGGAGCATGAGGAAAAGTAAAGCTAACTGGTTTAGAATTGTGGCAGTCTTAGCTTGGGCCGTTGGATTAGCTAAATGGTTAGATGATATCCGAAGATGGAAAAATCCAGTTACAACGGTTTTGCTTCATATACTCTACTTAGTACTTGTTTGGTATCCAGATTTAATTGTTCCAACTGGGTTTTTATACGTGGTTTTAATTGGGATATGGTATTACCGTTTTAGACCCAAAATACCTGCTGGTATGGATACACGGTTATCACAATCCGAAGCTGTTGATCCGGATGAATTAGACGAAGAATTCGACACAATGCCGAGCTCCAAACCACCTGATATGGTTCGGGTTCGTTATGACAGGTTAAGGATGTTGGCTGCGAGGGTGCAAACGGTTTTAGGTGATTTTGCAACACAAGGAGAAAGGGTTCAAGCATTGGTTAGTTGGAGGGACCCAAGAGCTACCAAATTGTTCATTGGAGTGTGTTTTGTTATTGCTGTTATACTCTATTCTGTGCCTCCTAAAATGGTTGCTGTGGCTTTGGGATTCTATTACCTCCGTCATCCAATGTTTCGGAACCCAATGCCGCCGGCTAGTTTGAACTTTTTCCGGCGACTTCCTAGCTTGTCCGATCGGTTGATGTAG 3081 0.4742 MNSMTTPFQQGPPQTVRRLVVEVVDARNLLPKDGQGSASPYVVGDFDGQRKRTTTRFKELNPVWNETLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSGRGEDALVYYTLEKKSVFSWIRGEIGLKIYYYDELLQQEENQQQQQEQPPPQEEERPSGMEQERNRPQMMVEEGRVFQVNGPMEHCVPLPDGPPSPRVMVVEESPSPVVRVQQDPPLPEMYGPPEPEMQYHQPEVRKMQAVRNDRVKIMKRPNGDYAPKDISGKKPNGESERIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTSSHYVRSKPASYRPNEPNDSPEWNQVFALGYNKTDAASATLEISVWDSPTEQFLGGVCFDLSDVPIRDSPDSPLAPQWYRLEGGAAEQNSGRVSGDVQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLNLTPNLPPLTTPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWHEDLLFVAGEPLEDSMVLLVEDRTTKEAALLGHVVIPLTSIEQRIDDRHVPAKWFPLEGGSYCGRVHLRLNLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMKSKGPGKGSTDAYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSEEKPDCRIGKVRIRVSTLESNKIYTSSYPLLVLTRTGLKKMGEIELAVRFACPSFLPDMCAVYGQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQSEAVDPDELDEEFDTMPSSKPPDMVRVRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCFVIAVILYSVPPKMVAVALGFYYLRHPMFRNPMPPASLNFFRRLPSLSDRLM 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03317 1026 Gene3D C2 domain 293 426 IPR035892 -
Vifa4g03317 1026 MobiDBLite consensus disorder prediction 266 287 - -
Vifa4g03317 1026 CDD C2C_MCTP_PRT_plant 460 603 IPR047258 -
Vifa4g03317 1026 Gene3D C2 domain 14 183 IPR035892 -
Vifa4g03317 1026 CDD C2B_MCTP_PRT_plant 299 428 IPR047257 -
Vifa4g03317 1026 FunFam C2 domain-containing protein 282 426 - -
Vifa4g03317 1026 Gene3D C2 domain 445 585 IPR035892 -
Vifa4g03317 1026 MobiDBLite consensus disorder prediction 155 184 - -
Vifa4g03317 1026 SMART C2_3c 615 722 IPR000008 -
Vifa4g03317 1026 SMART C2_3c 18 123 IPR000008 -
Vifa4g03317 1026 SMART C2_3c 299 396 IPR000008 -
Vifa4g03317 1026 SMART C2_3c 460 562 IPR000008 -
Vifa4g03317 1026 Pfam C2 domain 459 569 IPR000008 -
Vifa4g03317 1026 Pfam C2 domain 299 403 IPR000008 -
Vifa4g03317 1026 Pfam C2 domain 18 109 IPR000008 -
Vifa4g03317 1026 Pfam C2 domain 614 725 IPR000008 -
Vifa4g03317 1026 ProSiteProfiles C2 domain profile. 597 723 IPR000008 -
Vifa4g03317 1026 CDD C2A_MCTP_PRT_plant 18 148 - -
Vifa4g03317 1026 Pfam Plant phosphoribosyltransferase C-terminal 871 1026 IPR013583 -
Vifa4g03317 1026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 459 605 IPR035892 -
Vifa4g03317 1026 CDD C2D_MCTP_PRT_plant 615 742 IPR047255 -
Vifa4g03317 1026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 614 766 IPR035892 -
Vifa4g03317 1026 ProSiteProfiles C2 domain profile. 281 402 IPR000008 -
Vifa4g03317 1026 FunFam C2 domain-containing protein 597 749 - -
Vifa4g03317 1026 Gene3D C2 domain 611 748 IPR035892 -
Vifa4g03317 1026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 299 444 IPR035892 -
Vifa4g03317 1026 ProSiteProfiles C2 domain profile. 439 567 IPR000008 -
Vifa4g03317 1026 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 19 1026 IPR047259 -
Vifa4g03317 1026 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Vifa4g03317 1026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 18 164 IPR035892 -
Vifa4g03317 1026 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03317 Vifa-Chr4 1040120541 1040123621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03317 5 1026 Lipid Metabolism Gene Families AT1G74720 69.927 0.0 1548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03317 - - gmx:100783882 1753.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03317 4 1040120541 1040123621 Vifa4g03317 4 1040120541 1040123621 ECH