Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03284 ATGTTGTCTCTCAAAATGACTGAGATGTGGACAACAATTGGGTCAACCTTAGCAAGCTTCATGTTCATTTGGGCTATCATAAGGCAATACTGTCCATACCAACTCCTACGTTTCTTTGAAAAGTACAGTCATAGAATCATGGACTACTTCTACCCTTACATAAGAATCTCATTCCATGAATTCTTAGGTGACAGACTCAAAAGAAGTGATGCTTATGGAGCTGTTGAAGCATATCTCAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATAGGAAAAGACAGCACCAACTTGGTCTTAACAATGGATGAATATGAGAGAGTAACCGATGATTACAACGGCGTAAAAGTCTATTGGGTTTGTAGCAAAGTCATGGCAGCTTCAAGATCTATGCCTTATTATCAAGAACAAGAGAAGAGATTCTACAAACTCACTTTTCATAAGAAGTATAGAGATACAATAACAGGTTCTTATTTGGATCATGTGATGAAAGAAGGGAAAGAGATTCGTTTGAGGAATCGACAGAGGAAATTGTATACAAATAGTCCTGGTTATAAATGGCCTAGCTATAAGCAAACTATGTGGAGTCACATTGTTTTTGAACACCCTGCAACTTTTGAAACAATGGCTATGGAGCCAGAGAAAAAGAAAGAGATCATTGAAGATTTGGTTACTTTTAGCAAAAGTAAAGATTTTTATGCTAGGATTGGGAAAGCTTGGAAAAGGGGTTATCTACTTTTTGGTCCTCCAGGTACTGGTAAATCAACAATGATTGCTGCTATGGCAAATTTGTTGGGTTATGATGTTTATGATTTGGAGTTAACAGCGGTGAAAGACAACACTGAGTTAAGGAAGCTTTTGATAGAAACAACAAGTAAGTCAATTATTGTTATTGAAGATATAGATTGTTCACTTGATCTAACAGGCCAGAGAAAGAAAAAAGGTGAAAGTAAGTTTTTTTCTGATGATGAGAATGATAACAAGGCGAATTTCGATGCGGGGAGGAAGGAGGTGAAGGAAGAAGGAAGTGGAGGTGGGAGTAGCAAGGTTACACTTTCAGGGCTATTGAATTTCATTGATGGGATATGGTCAGCATGTGGAGGTGAGAGGCTGATTGTTTTCACTACAAATTATGTTGAGAAGCTTGATCCTGCGCTTATAAGGAGGGGTAGAATGGACAAGCATATTGAGCTTTCTTATTGTAGTTTTAATGGTTTTAAAGTGCTTGCTAATAATTACTTGAGAGTTGAGAAACATGCATTGTTTGAGAGTGTTGAGAGGTTAATTGGTGAAGTGAAGATTACTCCTGCTGATGTTGCTGAGAATCTTATGCCTAAGTCACCAATGGATGATGCTGATAAGTGTCTTTTGAATTTGATTGAGGCTCTTGAGGAAGTCAGAGGGAAGAGTGGTTTGATTAAGGAACATGATGAGGAAGTGGAATGTGTTAGTAGTGTTATTAAGGAAAATGGTGAGTTTGTTGATGATGATGAGAAAGAAATTGATGAAGGAAAGAAGCAAATTGAGAGGTAG 1542 0.3781 MLSLKMTEMWTTIGSTLASFMFIWAIIRQYCPYQLLRFFEKYSHRIMDYFYPYIRISFHEFLGDRLKRSDAYGAVEAYLSANTSKSAKRLKAEIGKDSTNLVLTMDEYERVTDDYNGVKVYWVCSKVMAASRSMPYYQEQEKRFYKLTFHKKYRDTITGSYLDHVMKEGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLFGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGESKFFSDDENDNKANFDAGRKEVKEEGSGGGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCSFNGFKVLANNYLRVEKHALFESVERLIGEVKITPADVAENLMPKSPMDDADKCLLNLIEALEEVRGKSGLIKEHDEEVECVSSVIKENGEFVDDDEKEIDEGKKQIER 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03284 513 MobiDBLite consensus disorder prediction 321 346 - -
Vifa4g03284 513 Gene3D - 203 398 IPR027417 -
Vifa4g03284 513 SMART AAA_5 243 405 IPR003593 GO:0016887
Vifa4g03284 513 PANTHER BCS1 AAA-TYPE ATPASE 12 472 - -
Vifa4g03284 513 CDD RecA-like_BCS1 222 401 - -
Vifa4g03284 513 MobiDBLite consensus disorder prediction 321 350 - -
Vifa4g03284 513 Pfam Domain associated at C-terminal with AAA 32 124 IPR025753 -
Vifa4g03284 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 452 IPR027417 -
Vifa4g03284 513 FunFam AAA-ATPase ASD, mitochondrial 199 399 - -
Vifa4g03284 513 ProSitePatterns AAA-protein family signature. 373 392 IPR003960 GO:0005524|GO:0016887
Vifa4g03284 513 Pfam ATPase family associated with various cellular activities (AAA) 344 402 IPR003959 GO:0005524|GO:0016887
Vifa4g03284 513 Pfam ATPase family associated with various cellular activities (AAA) 248 311 IPR003959 GO:0005524|GO:0016887
Vifa4g03284 513 Gene3D - 399 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03284 Vifa-Chr4 1029499487 1029501028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03284 208 401 Miscellaneous Gene Families AT5G58870 28.713 9.83e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03284 - - gmx:100798981 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03284 4 1029499487 1029501028 Vifa4g03284 4 1029499487 1029501028 ECH