Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03283 ATGAAGAGAGCGAGAACTGGAAAGGTTGATTCTTTCTTCTTCTCGCTCTGTCGACAACGATCCTTCCAAATTCTCATCATCCTCGCTCTTTTCTACGTTCTTCTATTCACTCTCGAAATCCCCTTCGTTTTCAAAAACACCGCCACGCGCTCTGAAAGATACGCGCTCGAACGACAGCAACAGCTTCAACCGAGTCAGTCTCAGGCACACGAAATCACTCGCCGCCACAATCGCCGTTCGATTCTCTCCGGATTGATACTAAACGACGCCGCGTTTGATTCCGAGGTTTATCACTCGGCGTATAGGGTTGGGAAGAGGGTCTGGGAGGAACTTGAATCGGCGAAAGCCAAAACGCCGATTCAATCTGCTTCCGTTTTGAAACCGGTGAATAATTCGAGGCTATGTCCGCGATCGGTTTATGTTTCCGGTTCGGATTTTACCGGGAATGGGAGTTTGATGATGATTCCTTGTGGGTTGACGTTAGGGTCGCATGTAACGGTGGTTGGGATGCCGTTGGGGACGCCGGAGGGTAAGAAGTCTCAGTTTATTGTGGAGTTGCAGGGTTTAAAAACTGGGGAAGGGGAGGACCCACCTAGGATATTGCATTTCAATCCTAGATTGAAAGGGGATTGGAGTTCGAAGCCTGTTATTGAGCTTAATACTTGTTATAGGATGCAATGGGGTACTTCTTTGAGATGTGATGGTTGGAAATCTAGGGCTGATCAAGATACTGTTGACGGGCTGGTGAAGTGTGAGAAGTGGATTGGGGGAGAATCAGGAGATGACAGAGACGCAGTGGAGTCTAAATCAGAATGGTGGTTGAAGAGACTCATAGGTCGGACAAAAACAGTAACAGTTGATTGGCCATTCCCATTTAATGAGAACAAGCTATTTGTTCTTACTCTTAGTGCTGGATTGGAGGGCTACCATTTTAATGTTGATGGGAGGCATGTGGCCTCCTTTCCTTATCGCACTGGCTTTACTCTTGAGGATGCTACTGGACTCACTGTAACCGGAGATATTGATGTCCATTCTATATTTGCCGCCTCCTTGCCTTCACTGCATCCTCGTATTTCTCCACAGCAGTATCTTGAATTTTCAACCAGATGGCGTGCCCCACCACTACCTGAGTTTGGGGTGGAATTGTTCATCGGCGTCCTATCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGAAAGTCGTGGATGCAGCATAGCCTTATCAAATCTTCAGAAGTGGTGGCTCGTTTCTTTGTAGCATTGCACCAGAGAATAGAAATTAATGCAGAGTTGAAGAAGGAAGCAGAATTTTTTGGAGATATTGTTATTGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCTATATGTGAATATGGGGTCCATACAGCAGCTGCAGCGTACATCATGAAAGGTGACGATGACACCTTTGTGAGGGTGGATTCTGTTATAAATGAAGCAAGGAAAGTTCCAGATTTTATGAGTGCTTATATTGGGAATATAAATTATTATCACAAACCCTTGCGCCATGGTAAATGGGCTGTGACATATGAGGAGTGGCCAGAAGAGGATTACCCGCCATATGCTAATGGCCCGGGTTATATTCTGTCTTATGACATTGCAAACTACATCGTTTCTGAATTTGAGAAGCATAAATTAAGGTTGTTTAAAATGGAAGATGTTAGCATGGGAATGTGGGTAGAGAAATTTAACAGCACAAAACAAGTGTACTATTCGCATAGCTTAAAGTTCTGCCAGTTTGGGTGTATTGAAGGCTATTATACAGCCCATTACCAATCTCCAAGACAGATGATGTGCCTTTGGGAAAAATTGCAGCGGCAAACAAGTCCTCTATGCTGCAACATGAGATAA 1887 0.4483 MKRARTGKVDSFFFSLCRQRSFQILIILALFYVLLFTLEIPFVFKNTATRSERYALERQQQLQPSQSQAHEITRRHNRRSILSGLILNDAAFDSEVYHSAYRVGKRVWEELESAKAKTPIQSASVLKPVNNSRLCPRSVYVSGSDFTGNGSLMMIPCGLTLGSHVTVVGMPLGTPEGKKSQFIVELQGLKTGEGEDPPRILHFNPRLKGDWSSKPVIELNTCYRMQWGTSLRCDGWKSRADQDTVDGLVKCEKWIGGESGDDRDAVESKSEWWLKRLIGRTKTVTVDWPFPFNENKLFVLTLSAGLEGYHFNVDGRHVASFPYRTGFTLEDATGLTVTGDIDVHSIFAASLPSLHPRISPQQYLEFSTRWRAPPLPEFGVELFIGVLSAGNHFAERMAVRKSWMQHSLIKSSEVVARFFVALHQRIEINAELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVHTAAAAYIMKGDDDTFVRVDSVINEARKVPDFMSAYIGNINYYHKPLRHGKWAVTYEEWPEEDYPPYANGPGYILSYDIANYIVSEFEKHKLRLFKMEDVSMGMWVEKFNSTKQVYYSHSLKFCQFGCIEGYYTAHYQSPRQMMCLWEKLQRQTSPLCCNMR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03283 628 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 151 349 IPR001079 GO:0030246
Vifa4g03283 628 Pfam Galactosyltransferase 395 575 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa4g03283 628 SMART Gal_bind_lectin_2 155 348 IPR001079 GO:0030246
Vifa4g03283 628 Gene3D - 152 347 - -
Vifa4g03283 628 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 361 578 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa4g03283 628 FunFam Hydroxyproline O-galactosyltransferase 373 616 - -
Vifa4g03283 628 CDD GLECT 155 347 IPR001079 GO:0030246
Vifa4g03283 628 FunFam Hydroxyproline O-galactosyltransferase GALT2 263 347 - -
Vifa4g03283 628 SUPERFAMILY Concanavalin A-like lectins/glucanases 153 347 IPR013320 -
Vifa4g03283 628 Gene3D - 379 624 - -
Vifa4g03283 628 Pfam Galactoside-binding lectin 152 347 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03283 Vifa-Chr4 1029383384 1029386907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03283 1 628 Glycosyltransferase AT1G74800 59.647 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03283 K20843 - gmx:100800292 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03283 4 1029383384 1029386907 Vifa4g03283 4 1029383384 1029386907 ECH