Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03256 ATGATTCCTCCTCGTTATTATTCCACATGTTTCCTTCTCTTCCTCCTCTTACTTTCCACCTCCCTCTCTCAATCCCATCGCGCTGCCAAGAAAAAACGCATGCGAGAAAAAGTTCGCAATATGTTTCACCATGCTTATGACAACTATATGACTCATGCGTTTCCGCATGATGAGTTAAAACCTCTTACTAAAACATTCACCGACTCCCTAGTCGAGCTGGGAAATTTGAAGCTTGAACGTTTGCCTCAAGATTATAATGGCTCTGCGCTTTCGCTAATTGAATCATTGTCTAGCCTTGTGATTATGGGAAATAATACTGAATTTGAGAAGGGAGTGCGTTGGCTTTCAGAAAATCTAACATTTGATGTTGATGCTCGAATAAATCTTTTTGAGTGCAATATTAGAGTTCTTGGAGGACTTGTGTCTGCTCATTTACTGGCATCTGATTCTTCAAAAAACTTGCTTAAAGGATCTTACAAGAATCAGCTTCTAGGTCTGGCTGAAGATTTAGGGAAACGATTTCTACCAGCGTTTAATACGCCCACTGGATTACCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAATAATGACCGGTGACCCTATATATGAATCAGTAGCTCTACGAGCTCTCCGTAAGCTATGGAGTATGCAGAGCTCGTTAAAATTATTTGGAACCACTCTTGATGTGTCAACTGGGAAATGGATCGAACATTCTGCGGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATATCTACTCAAAGCTCATATTCTTTTCGGAAAGGAAGACTATTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAGAAGCATTTCAGACACGGTCCTTGGTACCATGAAGCTGATATGAGGACCGGAAGAGCAACTTATTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCAGGCCTACAGGTTCTTATCGGAGATATATCTGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGCAATTTGGAGTGTTGCCGGAGAGGTATTTACTGGACCATCAGATGCTTCATCCTACGGAAAAATATTATCCATTACGCCCCGAGTTTGCCGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGTGAATTAATAGTCAATTCCCTTAATTTATACGCCAGAGTAGAAGGTGGGTTTGCAAGTATCAAGGATGTGACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGTAAATATTTGTATCTTCTCTTCGATGATTCATTTATGCTCGAGAATAATTATGTGTTTACAACTGAAGGTCATCCCCTTCCAGTACTAAGCACTTGGCATGAAGAGCTTCCAGAGGCTTATATTCCAACCAATTGGACCAATCTAAAGAGACCGAATCGAGCGAGTGCAATGTCTTTGCAAGTATGTCCTGCTATGACTTTAGACTCCGGACAACATATAGAAAGTGCTTGCCATATCCCGGATGTTCGCAGAGATTACAAGTGTTTGACCGATGAAGATTGTGGAGTGGATGCAATAACCTGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGTTATGGCTCTTCCTTTGA 1698 0.4105 MIPPRYYSTCFLLFLLLLSTSLSQSHRAAKKKRMREKVRNMFHHAYDNYMTHAFPHDELKPLTKTFTDSLVELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKNLLKGSYKNQLLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSIMTGDPIYESVALRALRKLWSMQSSLKLFGTTLDVSTGKWIEHSAGIGAGVDSFYEYLLKAHILFGKEDYWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFHVWKQFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGELIVNSLNLYARVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFMLENNYVFTTEGHPLPVLSTWHEELPEAYIPTNWTNLKRPNRASAMSLQVCPAMTLDSGQHIESACHIPDVRRDYKCLTDEDCGVDAITCRRRSCSMAGYCGLWLFL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03256 565 Gene3D - 23 485 IPR012341 GO:0005975
Vifa4g03256 565 Pfam Glycosyl hydrolase family 47 41 474 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 SUPERFAMILY Seven-hairpin glycosidases 32 488 IPR036026 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 440 460 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 324 340 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 176 195 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 267 284 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 41 61 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 126 144 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PRINTS Glycosyl hydrolase family 47 signature 381 405 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vifa4g03256 565 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 10 482 IPR044674 GO:0004571|GO:1904380|GO:1904382
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03256 Vifa-Chr4 1021240519 1021244706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03256 2 562 Glycoside Hydrolase AT1G27520 74.956 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03256 K10084 - gmx:100793674 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03256 4 1021240519 1021244706 Vifa4g03256 4 1021240519 1021244706 ECH