Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03253 ATGGGCGACAACAAACGCAAGAGAGGCCGCAAACCTAAAACCCCTTCCCCCGAAACCCTAGACACCCCCGCCACCGCCCCTACCACCACCGTCGCTACCAACGCATCCCCGTCCCTCATCGACGACGACTTCTCTGTCGGAAACGTCGAACTCATCGACAAAAGTGCCTCTTCCCATCTCGGTCGCCGCCGCGGCCGCCCCAAGAAACTCCCCACAAATCCGGACAAGCCACCCTCTGGCCGCCGCCCTGCTCGCACTGTAGACAGCAACGGTGCTGTCCCGACGGGTCCTGTCGAAGTAGGCCCTACTGCTATAGACGCGGACCCCATATGGGAGAGTATCTCGGCGAGGGTGTTGCCGTCTATGGATTCGGTGGTGAAAGTGTTCTGTGTTCATACGGAACCGAACTTTTCGTTACCGTGGCAGAGGAAGAGACAGTATAGTTCCAGTAGCAGTGGGTTTGTGATTAGTGGGAAGAGGGTTCTCACCAATGCGCATTCCGTTGAGCATTACACTCAGGTCAAGCTCAAGAAACGTGGCTCTGATACTAAGTACTTGGCTACTGTTCTTGCCATTGGAACTGAATGTGATATTGCCATGCTTACCGTTGATGATGATGAGTTCTGGCAAGGTATGTCACCTGTGGAGTTTGGAGATTTGCCTACCCTTCAAGATGCAGTAACTGTTGTGGGCTACCCAATTGGAGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGCATTGAGATTTTATCTTACGTCCATGGTTCCACAGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGAAATTCTGGTGGACCTGCATTTAATGGTAAAGGAAACTGTGTGGGGATAGCATTTCAGTCTCTCAAACATGAAGATGTGGAGAATATAGGTTATGTTATTCCAACGCCAGTTATCACTCATTTCATCCAGGATTATGAGAAGAATAAAGGATATACTGGGTTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCCGATCTACGAATGGCAATGGGCATGAAATCTAATCAGAAAGGTGTGCGCATTAGAAGAATTGATCCTACTTCTCCTGAATCAAAGGTTTTGAAACCATCCGATGTTATTCTTAGCTTTGACGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGCCACGGGGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGTGATGATGCAGCAATCAAAGTACTGCGGAATACAAATGTTCTCAAATTCAATATTAAACTTGATGGTCACAGGAGGCTTATTCCAGCACACAGCAAGGGCAAGCCACCCTCATATTATATCATTGCAGGATTTGTTTTTTCAACGGTTTCGGTTCCTTATCTTCGTTCTGAGTACGGAAAAGATTATGAGTATGAGGCTCCAGTCAAGATTTTGGATAAACTGCTGTATGCAATGCCACAATCACCAGATGAACAACTTGTTGTGATTTCTCAGGTGCTGGTTGCTGATATAAACATTGGATATGAAGAAATAGTTAATACCCAGGTTGTTGCTTTTAATGGTAAACCTGTGAAAAATCTCAAGAGCTTGGCTGCTATGGTTGAGAGTTGTGATGATGAGTATCTAAAATTTGATTTAGATTATGAACAGATAGTAGTCCTTCGCACGGAAACTGCAAAAGCTGCCACACTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCTGATGATCTCAAGTCATAG 1758 0.4568 MGDNKRKRGRKPKTPSPETLDTPATAPTTTVATNASPSLIDDDFSVGNVELIDKSASSHLGRRRGRPKKLPTNPDKPPSGRRPARTVDSNGAVPTGPVEVGPTAIDADPIWESISARVLPSMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGDLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNGKGNCVGIAFQSLKHEDVENIGYVIPTPVITHFIQDYEKNKGYTGFPILGVEWQKMENPDLRMAMGMKSNQKGVRIRRIDPTSPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDDAAIKVLRNTNVLKFNIKLDGHRRLIPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQLVVISQVLVADINIGYEEIVNTQVVAFNGKPVKNLKSLAAMVESCDDEYLKFDLDYEQIVVLRTETAKAATLDILATHCIPSAMSDDLKS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03253 585 MobiDBLite consensus disorder prediction 1 101 - -
Vifa4g03253 585 CDD PDZ_serine_protease 328 428 - -
Vifa4g03253 585 SUPERFAMILY Trypsin-like serine proteases 121 322 IPR009003 -
Vifa4g03253 585 Pfam PDZ domain 330 430 IPR001478 GO:0005515
Vifa4g03253 585 Gene3D - 435 585 IPR046449 -
Vifa4g03253 585 Gene3D - 209 320 IPR043504 -
Vifa4g03253 585 Gene3D - 323 434 IPR036034 GO:0005515
Vifa4g03253 585 PANTHER - 95 583 - -
Vifa4g03253 585 SUPERFAMILY PDZ domain-like 353 435 IPR036034 GO:0005515
Vifa4g03253 585 Pfam PDZ domain 437 582 IPR041517 -
Vifa4g03253 585 Pfam Trypsin-like peptidase domain 152 289 - -
Vifa4g03253 585 Gene3D - 108 208 IPR043504 -
Vifa4g03253 585 FunFam protease Do-like 9 210 320 - -
Vifa4g03253 585 MobiDBLite consensus disorder prediction 18 41 - -
Vifa4g03253 585 PRINTS HtrA/DegQ protease family signature 260 277 IPR001940 GO:0004252|GO:0006508
Vifa4g03253 585 PRINTS HtrA/DegQ protease family signature 153 165 IPR001940 GO:0004252|GO:0006508
Vifa4g03253 585 PRINTS HtrA/DegQ protease family signature 223 247 IPR001940 GO:0004252|GO:0006508
Vifa4g03253 585 PRINTS HtrA/DegQ protease family signature 181 201 IPR001940 GO:0004252|GO:0006508
Vifa4g03253 585 PRINTS HtrA/DegQ protease family signature 369 381 IPR001940 GO:0004252|GO:0006508
Vifa4g03253 585 FunFam Protease Do-like 9 102 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03253 Vifa-Chr4 1020444343 1020450113 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03253 K25897 - gmx:100791040 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03253 4 1020444343 1020450113 Vifa4g03253 4 1020444343 1020450113 ECH