Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03251 ATGATGAGTGATTATACAGTGGAGACGATAAATGACGGACTCACGGAGTTCAATGTGGAGTTTAATGGTCCTAAAGAAAGCCTTTATGAAGGTGGAGTTTGGAAGATTCGTGTTGAACTTCCTGATGCATATCCTTACAAATCCCCTTCTATCGGCTTCGTGAACAAAATATACCACCCGAATGTTGATGAGTTATCTGGCTCTGTATGCTTGGACGTAATTAACCAATCATGGAGTCCAATGTTTGATCTTCTAAACGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTCTATCCAAATGCTTCAGATCCTTTGAATGGTGACGCAGCATCCTTAATGATGAAGGATAGAAAGTTGTATGACCAAAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTTCAACAATGGTACAGGCGATGATGAGGACAGCGATGAGGAAGACATCAGTTGAAGCAGGCACCCAATCAAGTGATGATGAAATTCCCTGGTCATGCTGA 510 0.4078 MMSDYTVETINDGLTEFNVEFNGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDRKLYDQKVKEYCERYAKKENISTMVQAMMRTAMRKTSVEAGTQSSDDEIPWSC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03251 169 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Vifa4g03251 169 Pfam Ubiquitin-conjugating enzyme 5 127 IPR000608 -
Vifa4g03251 169 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 58 74 IPR023313 -
Vifa4g03251 169 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 133 IPR000608 -
Vifa4g03251 169 SUPERFAMILY UBC-like 4 135 IPR016135 -
Vifa4g03251 169 SMART ubc_7 1 133 - -
Vifa4g03251 169 FunFam Ubiquitin-conjugating enzyme 5, E2 1 144 - -
Vifa4g03251 169 CDD UBCc 1 128 IPR000608 -
Vifa4g03251 169 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 14 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03251 Vifa-Chr4 1019788210 1019790035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03251 4 102 Miscellaneous Gene Families AT3G17000 24.272 5.47e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03251 K10576 - gmx:100790685 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03251 4 1019788210 1019790035 Vifa4g03251 4 1019788210 1019790035 ECH