Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03221 ATGCAATCGTTATCGTTAAGTAGTAGCAAGAGTTTGGCGGGATTACGGTTGGTGGGTGAGGAAACGAGGGTGAAGAGAAGGAGTAGCAATTGCGTAATTGTGGCATGCGGTAATAATTCGGATAAAGAGACTCCAACCTCGTTTCTGTCTCGGACCCAAACCTACGCTCTCTTGAAACAACAGATGGAAGTAGCTGCTAAATCAGAGGATTACAAGGAAGCTGCTAGGATTCGAGATTCCCTTAGGTTATTTGAACAAGAAGAGCCTGTTTTAAGGTTGAGGAGGTTAATCAAGGAAGCAATTGCCGATGAGAGATTCCAGGATGCAGCTAGTTATCGTGACGAGCTAAAAAGAATTGCTCCGCACTCTTTTTTAAAATGTTCCAGTGATGCTACAACGTTGGGAGTCAGGGTTCAAGTAAGGAGTGTATATATAGAAGGCAGAAGTCAGCCTTCAAAGGGGCTATATTTTTTTGCATACAGAATAAGAATTACCAATAACTCAGATGACACAGTTCAACTTCTAAGAAGGCATTGGATTGTAACCGACGCTAATGGGAAATCAGAAAATGTATGGGGGATTGGTGTTGTTGGTGAACAGCCAGTACTTCTTCCTAGGACTAGTTTTGAGTACTCTTCTGCATGCCCATTAAGCACATCAAATGGTAGAATGGAAGGTGAATATGAGATGATCCATGTTGATAAAGTAGGCTCACGTTCATTTAATGCGGTCATTGCCCCCTTTTCTCTCGCTTTGCTAGGAGATGATGACTGTAATACTATTTGA 786 0.4211 MQSLSLSSSKSLAGLRLVGEETRVKRRSSNCVIVACGNNSDKETPTSFLSRTQTYALLKQQMEVAAKSEDYKEAARIRDSLRLFEQEEPVLRLRRLIKEAIADERFQDAASYRDELKRIAPHSFLKCSSDATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDDTVQLLRRHWIVTDANGKSENVWGIGVVGEQPVLLPRTSFEYSSACPLSTSNGRMEGEYEMIHVDKVGSRSFNAVIAPFSLALLGDDDCNTI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03221 261 Gene3D ApaG domain 126 256 IPR036767 -
Vifa4g03221 261 PANTHER OS05G0170800 PROTEIN 34 257 - -
Vifa4g03221 261 Pfam ApaG domain 148 231 IPR007474 -
Vifa4g03221 261 ProSiteProfiles UVR domain profile. 87 122 IPR001943 GO:0005515
Vifa4g03221 261 Pfam UvrB/uvrC motif 58 86 IPR001943 GO:0005515
Vifa4g03221 261 Pfam UvrB/uvrC motif 92 119 IPR001943 GO:0005515
Vifa4g03221 261 ProSiteProfiles ApaG domain profile. 130 257 IPR007474 -
Vifa4g03221 261 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 52 85 IPR036876 -
Vifa4g03221 261 SUPERFAMILY ApaG-like 132 251 IPR036767 -
Vifa4g03221 261 ProSiteProfiles UVR domain profile. 52 87 IPR001943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03221 - K06195 lja:Lj4g3v1476200.1 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03221 4 1015126173 1015127902 Vifa4g03221 4 1015126173 1015127902 ECH