Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03206 ATGAAACACATATTTTCCTATTGTTTGTGCCATTTTCTTCTGTTATTAGTTACTTCTTTTGTTGTAACACTGTCTGATGATGCTGATGTAACAGAAACTAACCTGCTTCTCAGGATTAAATCAGAGCTGGTGGATCCATTAGGAGCCATGAACAACTGGTCTCCAACAACTCATGTCTGCAACTGGAATGGAGTAACATGTGATGATGATGTTGATCAGAAACATGTTGTAGGACTGAATCTTTCTGGTTCAGGACTATCAGGTTCCATTTCAGTTGAGTTAAGTCGTTTCGTTTCACTTCAAACACTTGATTTGTCTTCGAATTCACTTAATGGTTCCATTCCTTCAGAGCTAGGTAGCCTTCAAAATCTAGTAGAACTTCAACTATACTCAAATTACCTATCTGGTAACATTCCTATAGAGATAGGTAATTTGAAGAAGTTGCGAGTTCTTAGAATAGGCGACAATATGTTGACGGGTGGTATTCCATCTAGCATCATCAACTTGAGTGAGTTGAATGTGTTAGGTTTAGGTTATTGTGACTTGAATGGAACCATACCGATCGGAATTGGTAAATTGAAAAATCTAACCTCATTTGACTTACAAATGAATAGTCTTAGTGGCCTTATACCTGAAGAGATACAAAACTGCGAAAAGCTTCAAAATTTTGCAGCTTCAAACAACATGTTTGAAGGAAACATTCCTTCCTCTATAGGGTCACTTAGATCATTGAAAATTATTAATCTTGCCAATAACACTCTTTCTGGACCGATTCCTACATCGTTGAGTTATCTTTCTAACTTGACGTACCTGAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCGCATGAGCTTAACAGTTTGATTCAATTGCAGAAGATAGATTTGTCTAGAAACAACTTTTCTGGATCAATGCCTCTCCTTAATACCAAACTGAAGAGTCTTGAAACTTTAGTTCTTTCTGATAATTCTTTGACAGGTAGCATTCCAAGTAGTTTCTGTTTCAAAAGTTCAAAGCTTCAGCAACTTTTCTTGGCTCGAAATATTCTCTCGGGAAGATTTCCTTTAGAGTTACTCAACTGCACCTCAATACAACAGTTGGATCTCTCTGGTAATACCTTTGAAGGTGAGATTCCATCAAGCATAGACAAATTGCAGAATCTCACTGATCTTGTACTGAACAACAACACATTTGTTGGATCACTGCCTCGTGAAATCGGAAACATCACTACTTTGGAAAGTCTTTTCCTCTTTGGTAACTTTTTCACAGGTGAAATTCCAGTGGAGATTGGAAAGCTGAAAAGATTGAACACGATTTACCTTTACGATAACCGAATGTCAGGACTCATACCAAGAGAGTTAACAAACTGTACAAGCTTGAGAGAAATCGATTTCTTTGGAAACCGTTTTACAGGCTCCATTCCAGAAACTATAGGGAAGTTGAAGAACTTGGTTCTTCTTCATTTGAGGCAAAATGTGTTTTCTGGTCCAATCCCTCCAAGTTTAGGATACTGCAAAAGTCTTCAGATACTAGCCTTAGCAGATAACAAACTTTCAGGTTCAATTCCACACACATTCAGTTACCTTTCAGAACTTTATAAGATTACCCTTTACAACAACTCTTTTCAAGGACCTATCCCGAATTCACTTTCATCTCTTAAAAACCTCAAAATCATAAATTTTTCACACAATAAGTTCAGTGGAAGTTTCTTTCCTCTCACCGCTTCGAATTCTCTTACTCTTCTTGACTTGACCAACAACAGTTTCTCAGGTCCTATCCCTTTGATTCTAGCCAACTCAAGAAACCTCCGCCGTCTCCGTCTCGCATACAATAATCTCACAGGAACTATACCTTCTGAATTTGGCCAGCTTAATGATCTCAACTTTTTTGATTTATCATATAACAATTTAACCGGAGAACTTCCACCTCAGCTCTCGAATTCGGGGAAAATAGAACACATTTTGCTGAGCAACAACAGATTGAATGGCAAAATACCTAACTGGTTAGGAACTTTTCAAGGACTTGGTGAACTAGATCTCTCATACAATAACTTCAGTGGCAAGGTACCTTCTGAAATCGGTAACTGTTCAAATTTACTCAAACTTTGTCTCCATCACAACAATTTGTCTGGCGAAATTCCTCAAGAGATTGGAAATCTCACTTCTCTTAATGTCTTCAACATTCAAAGCAATAGTCTCACCGGCGTCATTCCTTCGACAATTCAGAAATGCAAGAAGCTCTATGAGCTAAGGCTCTCACAAAACTTTCTGACAGGTAAAATACCATTTGAACTAGGCGAGCTTGACGAGTTACAAGTGATATTAGATTTGAGTAAAAACCTCTTCTCTGGTGAGATTCCTTCATCTCTAGGAAACCTAATGAAGCTAGAAAGACTCAACCTATCTTTCAATCAACTTCAAGGAAAAGTTCCATCTTCACTTGGTAAACTCACAAGCCTGCATGTGTTGAATCTCTCATACAACCATCTTGAAGGCCAGATTCCTTCAACTTTTTCAGGCTTTCCAAGAACCACTTTCATGAACAATAGTCGCTTATGCGGTTTGCCTCTAGTAACTTGCTCAGGATCAACATCAGAGAGGAAAATGCAGCTGTCAAACACGCAAGTGGCAGTTATAATTGTGGCTATTGTGTTTACTTCAACTGTGATATGTTTGGTTATGTTGTATATAATGCTTAGAATTTGGTGCAACTGGAGAAAAGTTGCAATATCAAATGCAGATGGAGGTGGTGTTGGTCAGAAGAAAGAGGAAGGTAGATGGGTTTGTAATGATCAGAAGACAAGGAATGGAGAGTATTGGAATATGAATTCATTTGGATTCATTCCTTCACCAGATAAGAATAATTCAGTCACAACAACTTGTTTCTTTAATATCAAAATGGAAGCCATGGAAAATACAAATATATGA 2931 0.3767 MKHIFSYCLCHFLLLLVTSFVVTLSDDADVTETNLLLRIKSELVDPLGAMNNWSPTTHVCNWNGVTCDDDVDQKHVVGLNLSGSGLSGSISVELSRFVSLQTLDLSSNSLNGSIPSELGSLQNLVELQLYSNYLSGNIPIEIGNLKKLRVLRIGDNMLTGGIPSSIINLSELNVLGLGYCDLNGTIPIGIGKLKNLTSFDLQMNSLSGLIPEEIQNCEKLQNFAASNNMFEGNIPSSIGSLRSLKIINLANNTLSGPIPTSLSYLSNLTYLNLLGNKLNGEIPHELNSLIQLQKIDLSRNNFSGSMPLLNTKLKSLETLVLSDNSLTGSIPSSFCFKSSKLQQLFLARNILSGRFPLELLNCTSIQQLDLSGNTFEGEIPSSIDKLQNLTDLVLNNNTFVGSLPREIGNITTLESLFLFGNFFTGEIPVEIGKLKRLNTIYLYDNRMSGLIPRELTNCTSLREIDFFGNRFTGSIPETIGKLKNLVLLHLRQNVFSGPIPPSLGYCKSLQILALADNKLSGSIPHTFSYLSELYKITLYNNSFQGPIPNSLSSLKNLKIINFSHNKFSGSFFPLTASNSLTLLDLTNNSFSGPIPLILANSRNLRRLRLAYNNLTGTIPSEFGQLNDLNFFDLSYNNLTGELPPQLSNSGKIEHILLSNNRLNGKIPNWLGTFQGLGELDLSYNNFSGKVPSEIGNCSNLLKLCLHHNNLSGEIPQEIGNLTSLNVFNIQSNSLTGVIPSTIQKCKKLYELRLSQNFLTGKIPFELGELDELQVILDLSKNLFSGEIPSSLGNLMKLERLNLSFNQLQGKVPSSLGKLTSLHVLNLSYNHLEGQIPSTFSGFPRTTFMNNSRLCGLPLVTCSGSTSERKMQLSNTQVAVIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISNADGGGVGQKKEEGRWVCNDQKTRNGEYWNMNSFGFIPSPDKNNSVTTTCFFNIKMEAMENTNI 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03206 976 SUPERFAMILY RNI-like 227 585 - -
Vifa4g03206 976 SMART LRR_sd22_2 434 466 - -
Vifa4g03206 976 SMART LRR_sd22_2 506 532 - -
Vifa4g03206 976 SMART LRR_sd22_2 97 126 - -
Vifa4g03206 976 SMART LRR_sd22_2 145 171 - -
Vifa4g03206 976 SMART LRR_sd22_2 193 219 - -
Vifa4g03206 976 SMART LRR_sd22_2 241 267 - -
Vifa4g03206 976 FunFam Uncharacterized protein 380 475 - -
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 575 870 IPR032675 -
Vifa4g03206 976 FunFam Uncharacterized protein 188 282 - -
Vifa4g03206 976 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 283 379 - -
Vifa4g03206 976 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 476 572 - -
Vifa4g03206 976 SMART LRR_typ_2 313 336 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 554 579 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 721 744 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 625 649 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 265 289 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 818 841 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 97 121 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 794 817 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 145 169 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 193 216 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 386 410 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 482 506 IPR003591 -
Vifa4g03206 976 SMART LRR_typ_2 673 697 IPR003591 -
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 475 574 IPR032675 -
Vifa4g03206 976 PANTHER UNNAMED PRODUCT 8 534 - -
Vifa4g03206 976 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 29 187 - -
Vifa4g03206 976 Pfam Leucine Rich Repeat 796 818 IPR001611 GO:0005515
Vifa4g03206 976 Pfam Leucine Rich Repeat 315 335 IPR001611 GO:0005515
Vifa4g03206 976 Pfam Leucine Rich Repeat 820 842 IPR001611 GO:0005515
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 287 361 IPR032675 -
Vifa4g03206 976 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 185 286 IPR032675 -
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Vifa4g03206 976 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 573 865 - -
Vifa4g03206 976 Gene3D Ribonuclease Inhibitor 363 474 IPR032675 -
Vifa4g03206 976 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Vifa4g03206 976 SUPERFAMILY L domain-like 31 307 - -
Vifa4g03206 976 SUPERFAMILY RNI-like 514 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03206 Vifa-Chr4 1012499994 1012502924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03206 247 882 Receptor kinase-like Gene Family AT5G46330 32.114 9.08e-101 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03206 - - gmx:100779315 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03206 4 1012499994 1012502924 Vifa4g03206 4 1012499994 1012502924 ECH