Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03153 ATGAATGACTTCACTACCACCATCACCACCCTCCTCCACCTTCAACACAAACAAAAACCCCTCATGCATCCCTTCAACTACCAATATCTCACTTCCATCAAAACCCTAACACCCCATATCACCTGTCTAGCAGTCCACCGTAACCTTCTCTACGCCGCGTCTCTTAACCTCATCAACGTCTTCGATCTCTCCTCCAGTTACACCCTCATCGACACCTTCAACGAAACCTCCACTTCAGGTTTTGTAAAATCTATCACGTTTACCGGTTCGAGAGTCTTCACTGCTCACCAAGATTGTAAAATTCGTGTCTGGCATATTACATCTTCAAAACAACACTGTCTTGTTTCATCTCTTCCGACTGTTAAAGACCGGTTGCGCCGCTGTATCGTTCCTAAAAACTACGTCAGCGTTCGACGTCACCGGAAGAGTCTTTGGATCAAACATAACGATACGGTGTCTGGTTTAGCAGTGAACGAAAAAGAGAAACTCATGTATTCTGTTTCTTGGGATAAAAGTTTCAAGATCTGGGATTTGTCTTCCGGGTATTACCGGTGTTTGGAGTCTTTTAACGCGCACGATGATGCCATTAACGCTGTTGTTGTTTCGGAGGACGGTACTGTTTATACTGCTTCTGCTGATGGGTGCATTAAGGCTTGGAAGATGGATAATAAGGTGAAACGGTATTCTTTGGTGAGTTCGGTAGGGAAGCAGAAGCCAACTGTTAATGCGTTGGCGATGAACGGAGATGGTACCGTTTTATTTTCCGGTGGGAGTGACGGGACGATATGCTGGTGGGAGAATAAGAAGAAGTGTGAGGAAAACAATAACGTCGTGTTGATGGAGACGTTGAGGGGTCACAGTGGGGCGATACTTTGTTTGGTCAACGTGAATGGATTGTTGGCGAGTGGGTCAGCGGATTATACGGTGAGGATTTGGCAGAGGGAGAGAAGGGATGGTGGTGGTTATTGTTGTAGGGGAGTATTGGAAGGACATGAAAAACCGGTGAAGTCGTTGGTGGTGGTTTCAGGTGGTGGTGAAGAGGATGATGAGGTCGTTAGGCTGTTTAGTGGAAGCCTTGACGGGGAAATTAGAGTGTGGGAGTGTCTGGTTTGA 1113 0.4645 MNDFTTTITTLLHLQHKQKPLMHPFNYQYLTSIKTLTPHITCLAVHRNLLYAASLNLINVFDLSSSYTLIDTFNETSTSGFVKSITFTGSRVFTAHQDCKIRVWHITSSKQHCLVSSLPTVKDRLRRCIVPKNYVSVRRHRKSLWIKHNDTVSGLAVNEKEKLMYSVSWDKSFKIWDLSSGYYRCLESFNAHDDAINAVVVSEDGTVYTASADGCIKAWKMDNKVKRYSLVSSVGKQKPTVNALAMNGDGTVLFSGGSDGTICWWENKKKCEENNNVVLMETLRGHSGAILCLVNVNGLLASGSADYTVRIWQRERRDGGGYCCRGVLEGHEKPVKSLVVVSGGGEEDDEVVRLFSGSLDGEIRVWECLV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03153 370 SMART WD40_4 276 313 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 66 105 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 26 62 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 139 177 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 321 367 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 227 266 IPR001680 GO:0005515
Vifa4g03153 370 SMART WD40_4 182 220 IPR001680 GO:0005515
Vifa4g03153 370 FunFam BnaA09g28200D protein 135 224 - -
Vifa4g03153 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 229 IPR001680 GO:0005515
Vifa4g03153 370 ProSitePatterns Trp-Asp (WD) repeats signature. 354 368 IPR019775 -
Vifa4g03153 370 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Vifa4g03153 370 PRINTS G protein beta WD-40 repeat signature 354 368 IPR020472 -
Vifa4g03153 370 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Vifa4g03153 370 Pfam WD domain, G-beta repeat 281 312 IPR001680 GO:0005515
Vifa4g03153 370 Pfam WD domain, G-beta repeat 324 366 IPR001680 GO:0005515
Vifa4g03153 370 Pfam WD domain, G-beta repeat 238 265 IPR001680 GO:0005515
Vifa4g03153 370 Pfam WD domain, G-beta repeat 184 220 IPR001680 GO:0005515
Vifa4g03153 370 Pfam WD domain, G-beta repeat 148 177 IPR001680 GO:0005515
Vifa4g03153 370 SUPERFAMILY WD40 repeat-like 24 367 IPR036322 GO:0005515
Vifa4g03153 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 266 IPR001680 GO:0005515
Vifa4g03153 370 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 367 IPR045182 -
Vifa4g03153 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 313 IPR001680 GO:0005515
Vifa4g03153 370 Gene3D - 136 369 IPR015943 GO:0005515
Vifa4g03153 370 Gene3D - 21 135 IPR015943 GO:0005515
Vifa4g03153 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 181 - -
Vifa4g03153 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 181 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03153 Vifa-Chr4 1000788083 1000789195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03153 175 366 Acyl Lipid Metabolism Gene Families AT3G18860 22.594 2.28e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03153 - - aprc:113874855 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03153 4 1000788083 1000789195 Vifa4g03153 4 1000788083 1000789195 ECH