Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03115 ATGGAACAAGAGAATGTGAGAAATAGGGTGGTGGAAGAACGAGAGGCATTGGTAGCATGCAGTGATCAAAGCATGAGAATTGGAGTGACTATATGGGACATGAAAACAGGAGAAAAGATGTTTCACATTCCAACATGTTCTTCACCACCTTTTGGTTTGTTGTGTTTAAGAAACCAGTTCATTGTTGCATCACAGTTCAACAAACATGGATCTATGGGTGGTGGATCCATTGTTGTATGGCCCTTGAACAAGCCTCAACAACCGATTATGAATAACACAGTGGAAGCCATTGGACCACTTTCTTGCACAAAAGATGGCATATACCTTGTGGGAGGTGGTTTATCTGGAAATGCTTATATCTGGAATGTGATTAATGGAAAATTGTTGAAGACTTGGACAGCTCATTACAAATCTGTGAAACACATAATATTTTCAAATGATGATTCTCTTCTTGTTTCTGGTTCAGCTGATGGTATGTTGTGTGTTTGGTCCATGATAAGTTTGTTAGATGTGGAAGAATCAGCAAGCAGGAATCCTTTATTACATCATTTGCCAGGGCATATGGCATCAATAACAGGCCTTTTGGCTATACCTTGTAATTGTTATTCATTTATAATATCAAGTGCTCTTGATGGAACATGCAAGGTTTGGGACTTTATCACTGGAATGCTTGTGCAAACTCAAGGCTATCCTTTGGCAATAACTTGCATTACCCTTCATGAAGGTGAAAGTCTTTTGTTTTGTGGTACAGAAAATGGAACAATATTTGTCAACAAACTTGATATTGGTTTGGAAGAAGGTTTTAATTCAATTATTAGAGGAGATCAATCACCTGAACTCAAAGGACACAGTGGAGCCATTATTGCAATGACATCTAGTAGGACATGCCTAATATCTTCTTCTGAAGACTGCACAATATGCATATGGGATGCCATCAACTGGACAATCACTCGAAGATTCAATCTTGAAAAAGGGAAAGTAACTAATCTTGTGGTAATACTTCAATCTTGGATTCTCTCCACATCAAATCATACAAGAGGCTCCAATCAATACACTGTTTCTCAATTGGGCAAGTCTCCTCTACAAATCAATGGACACAATGAAACTACCTCTCTTGTTTCTTTGTGTCGCATCTTCAAAGAAAAACAAACTCACATTGATTTAAGAAGCACTGGTTTATTGAGACAAAGCATTTCTGGTCCACAGAAAACACATGTGTCTATGGCCATGACCATGCAAATGAAAGTGGACAGAAATATTGAGAATCGTTCATGGGCAACAAAGATGGCAAAACATGCTATGGCGATAAACAGACAGATGAAGTCACGGCTGTTGGACTTGATACATCGTAGATTGTTTTGTACAAACAAAATAAACTTTCAAAAATCAGGAATGATAAGTAGGAAGCAAAGGAAAGGGATCAAGAAGTCGTTAAAAATGGAGTAA 1446 0.3797 MEQENVRNRVVEEREALVACSDQSMRIGVTIWDMKTGEKMFHIPTCSSPPFGLLCLRNQFIVASQFNKHGSMGGGSIVVWPLNKPQQPIMNNTVEAIGPLSCTKDGIYLVGGGLSGNAYIWNVINGKLLKTWTAHYKSVKHIIFSNDDSLLVSGSADGMLCVWSMISLLDVEESASRNPLLHHLPGHMASITGLLAIPCNCYSFIISSALDGTCKVWDFITGMLVQTQGYPLAITCITLHEGESLLFCGTENGTIFVNKLDIGLEEGFNSIIRGDQSPELKGHSGAIIAMTSSRTCLISSSEDCTICIWDAINWTITRRFNLEKGKVTNLVVILQSWILSTSNHTRGSNQYTVSQLGKSPLQINGHNETTSLVSLCRIFKEKQTHIDLRSTGLLRQSISGPQKTHVSMAMTMQMKVDRNIENRSWATKMAKHAMAINRQMKSRLLDLIHRRLFCTNKINFQKSGMISRKQRKGIKKSLKME 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03115 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 165 - -
Vifa4g03115 481 SUPERFAMILY WD40 repeat-like 27 333 IPR036322 GO:0005515
Vifa4g03115 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 310 IPR001680 GO:0005515
Vifa4g03115 481 PANTHER WD-REPEAT PROTEIN 18 15 447 IPR045227 -
Vifa4g03115 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 165 IPR001680 GO:0005515
Vifa4g03115 481 SMART WD40_4 85 122 IPR001680 GO:0005515
Vifa4g03115 481 SMART WD40_4 273 310 IPR001680 GO:0005515
Vifa4g03115 481 SMART WD40_4 177 218 IPR001680 GO:0005515
Vifa4g03115 481 SMART WD40_4 125 164 IPR001680 GO:0005515
Vifa4g03115 481 SMART WD40_4 221 259 IPR001680 GO:0005515
Vifa4g03115 481 Gene3D - 2 228 IPR015943 GO:0005515
Vifa4g03115 481 Pfam WD domain, G-beta repeat 279 310 IPR001680 GO:0005515
Vifa4g03115 481 Pfam WD domain, G-beta repeat 126 164 IPR001680 GO:0005515
Vifa4g03115 481 Pfam WD domain, G-beta repeat 180 218 IPR001680 GO:0005515
Vifa4g03115 481 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Vifa4g03115 481 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Vifa4g03115 481 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Vifa4g03115 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 227 IPR001680 GO:0005515
Vifa4g03115 481 Gene3D - 229 346 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03115 Vifa-Chr4 991133830 991137408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03115 106 249 Miscellaneous Gene Families AT5G08390 25.342 4.95e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03115 K14829 - gmx:102662801 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03115 4 991133830 991137408 Vifa4g03115 4 991133830 991137408 ECH