Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03099 ATGGCAACAATGCAAGAGTGTCCAAGGAGTCCAGAAGCGAAACTTGGGATGCGAGTGGAGGATCTATGGGATATTCAAGAAGCACAGTTGAGTCCTACTGAGAAGCTTAACGCTTGTTTTGAAAGCATCCCTGTTTCTGCCTTTCCTTTACCATCTTCAAACCAAGAAGTTGAAATAAAATCGGATGCTACTTTGTCTGAGGCTGTGAAGATATTGGCACATCATAATATTTTGAGTGCACCTGTGGTGAATGTTGATGCGCCTGAAGATGCTAGTTGGATTGATAGATATATTGGGATTGTTGAGTTTGCTGGAATTGTTGTGTGGATTTTGCATCAGTCTGAACCTGCATCTCCTAAGAGTCCATCAACTCCAACCAGTGCCACTGCTATTGCAGCCGCTGCAAACGGAAATACTTTTGCTCTTGAGCTTGAAGCCTTAGGCCTTGGATCTGCCTCCACAACTTCCGGAAACTTTTTCGAGGATCTTACTTCTTCTGAACTTTATAAGAACACCAAGGTTCGGGATATCTCTGGGACATTCCGATGGGCTCCGTTTCTTGCTTTGGAGAGATCAAACTCTTTTCTAACCATGCTCTTGTTGCTTTCTAAGTACAAGATGAAAAGTGTTCCTGTTGTTGACTTAGGTGCAGGTAGAATTGATAACATTATCACACAAGCCGCCGTGATTCATATGGTGGCAGAATGCGCCGGACTTCAGTGGTTCGAAAATTGGGGAACCAAGAAACTCTCTGACGTTGGTCTTCCTCTTGTGTCCCCAAAGCAAATCATCAAGGTTTATGAGGATGAACCTGTACTTCAAGCATTTAAAGTGATGAGGAAAGAGAAGGTTGGAGGAGTGCCTGTCATCAAAAGCGGCAGCAACACGCCAGTTGGTAATATAAGCTTGAGAGATGTGCAATTCTTGCTAACAGCCCCAGAAATCTATCACGATTATAGGGCTATTACAGTGAAGGATTTTATGACTGCTGTTAGCAGCTACTTAGAGAAGAATAAAACCGCATTCTCAATGTCATGTGAATTTGTTACATGCAAAATGGACTGTACAGTCAAAGAGTTGATTCAATTGCTTGACAGAGAGAAGATTCATAGGGTCTATGTTGTGGACAACAACGGGGACCTTGAAGGACTAATCTCGCTAAGAGATATCATCTCAAGACTAGTAGATGAGCCCCGTGGCTATTTTGGCGATTTCTTTGACGGTGTTCTCCCACTACCTGCTAACAGCAGGGTTTAA 1257 0.432 MATMQECPRSPEAKLGMRVEDLWDIQEAQLSPTEKLNACFESIPVSAFPLPSSNQEVEIKSDATLSEAVKILAHHNILSAPVVNVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPASPKSPSTPTSATAIAAAANGNTFALELEALGLGSASTTSGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIDNIITQAAVIHMVAECAGLQWFENWGTKKLSDVGLPLVSPKQIIKVYEDEPVLQAFKVMRKEKVGGVPVIKSGSNTPVGNISLRDVQFLLTAPEIYHDYRAITVKDFMTAVSSYLEKNKTAFSMSCEFVTCKMDCTVKELIQLLDREKIHRVYVVDNNGDLEGLISLRDIISRLVDEPRGYFGDFFDGVLPLPANSRV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03099 418 CDD CBS_pair_SF 199 306 - -
Vifa4g03099 418 Gene3D - 26 238 IPR046342 -
Vifa4g03099 418 SUPERFAMILY CBS-domain pair 28 234 IPR046342 -
Vifa4g03099 418 CDD CBS_pair_SF 261 391 - -
Vifa4g03099 418 ProSiteProfiles CBS domain profile. 344 402 IPR000644 -
Vifa4g03099 418 SMART cbs_1 262 311 IPR000644 -
Vifa4g03099 418 SMART cbs_1 185 234 IPR000644 -
Vifa4g03099 418 SMART cbs_1 55 111 IPR000644 -
Vifa4g03099 418 SMART cbs_1 347 395 IPR000644 -
Vifa4g03099 418 Pfam CBS domain 262 306 IPR000644 -
Vifa4g03099 418 Pfam CBS domain 57 102 IPR000644 -
Vifa4g03099 418 Pfam CBS domain 344 395 IPR000644 -
Vifa4g03099 418 ProSiteProfiles CBS domain profile. 258 319 IPR000644 -
Vifa4g03099 418 Gene3D - 247 397 IPR046342 -
Vifa4g03099 418 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 37 394 - -
Vifa4g03099 418 ProSiteProfiles CBS domain profile. 51 118 IPR000644 -
Vifa4g03099 418 SUPERFAMILY CBS-domain pair 222 404 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03099 Vifa-Chr4 989870489 989872471 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03099 - - gmx:100818156 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03099 4 989870489 989872471 Vifa4g03099 4 989870489 989872471 ECH