Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03056 ATGATCTCAATGCTCTTCCTCGGTCACCTCGGCGAGCTCGCTCTTGCTGGTGGCTCACTCGCCATTGGTTTCGCCAACATCACCGGTTACTCCGTTCTCTCCGGCCTTGCCATGGGGATGGAACCTATATGTGGCCAAGCTTTCGGCGCAAAAAGGTTCACACTTCTCGGCCTGACAATGCAAAGGATGGTACTTATTCTTCTACTAACATCAATTTTCATAGCATCCTTATGGCTCAACATGAATAAACTACTGCTTTTGTGTGGTCAACAAGAAGATATAGCAAAAGAAGCACAACTATACATTCTTTTTTCACTTCCTGATCTAGCAGCACAATCACTTCTTCACCCTTTGAGAATCTACCTCCGAAGTCAATCAATAACATTTCCTCTATCATGTTGTGCTGCACTCTCTATTCTCCTTCACATTCCCATTAACTACCTTCTTGTTACTTCGCTCAAATTGGGTATCAAAGGTGTCGCTTTAAGCGCTGTTTGGACGAATTTCAACTTCGTTGGCTCGTTGATCATATATTTAATTGTTTCTGGCACATACAAGACAACATGGAATGGAATTTCTTGGAGATGTTTTAGAAATTGGAAAGCATTATTGAACCTCGCAATTCCAAGTTGCGTTTCTGTTTGTCTTGAATGGTGGTGGTACGAAATCATGACTTTGCTTTGTGGGCTATTAATGAATCCAAAAGCAAGTGTTGCATCAATGGGAGTTTTGATTCAAACGACATCATTGATGTACATTTTCCCATCATCTCTAAGCTTTGGAGTATCAACAAGAGTTGGTAATGAGCTAGGAGCAGGGAATCCACACCATGCGAAAATCGCGGCTATAGTTGGAGTTTGTTTTAGTTTTGTATTAGGGTTTATGGCGTTTATATTCGCAGTTTCTGTGAGGAATGTTTGGGCTTGTATGTTCACAAGAGACAATGAGATCATCAATTTGACAAGAATTGTGTTGCCGATTGTTGGTGTATGCGAGTTTGGAAATTGTCCACAAACGACGGTTTGTGGAGTTTTGAGGGGAACGGCTAGGCCAAAATTGGGTGCGAATATAAACTTGATTTGTTTTTATGTAGTTGGAATGCCTATTGCTGTTTGGTTGAGTTTCTTTGGAGGGTTTGATTTTGAAGGTTTGTGGATTGGCATGTTGGCAGCACAAGGATGTTGTATGATGACAATGATGTTTGTGTTGGCACACACAAATTGGGATGGTCAAGCTCAAAGAGCTGAAGAGCTCATGTCATGTGATCAAGGGGATGAAGAACAATGA 1287 0.4149 MISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFTLLGLTMQRMVLILLLTSIFIASLWLNMNKLLLLCGQQEDIAKEAQLYILFSLPDLAAQSLLHPLRIYLRSQSITFPLSCCAALSILLHIPINYLLVTSLKLGIKGVALSAVWTNFNFVGSLIIYLIVSGTYKTTWNGISWRCFRNWKALLNLAIPSCVSVCLEWWWYEIMTLLCGLLMNPKASVASMGVLIQTTSLMYIFPSSLSFGVSTRVGNELGAGNPHHAKIAAIVGVCFSFVLGFMAFIFAVSVRNVWACMFTRDNEIINLTRIVLPIVGVCEFGNCPQTTVCGVLRGTARPKLGANINLICFYVVGMPIAVWLSFFGGFDFEGLWIGMLAAQGCCMMTMMFVLAHTNWDGQAQRAEELMSCDQGDEEQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03056 428 Pfam MatE 209 372 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa4g03056 428 Pfam MatE 1 148 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa4g03056 428 NCBIfam MATE family efflux transporter 1 385 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa4g03056 428 CDD MATE_eukaryotic 1 414 IPR045069 GO:0042910|GO:1990961
Vifa4g03056 428 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03056 Vifa-Chr4 983267315 983268601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03056 K03327 - gmx:100795165 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03056 4 983267315 983268601 Vifa4g03056 4 983267315 983268601 ECH