Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03040 ATGGACGGACCAACCGGTAACCGACGAGATACGCCTCCGTCCTCCATCTCTCCACCGCCTTCTCCTTCACCGGAAAACCTCCGTCACGTGGAACGCATGATTAACTCCAACCATTACACATCGCCTTCTAGAACAATCTACTCCGATAGGTTTATTCCCAGTAGATCTGCTTCCAAATTCGCTTTGTTTGATATCAATACTCCTACCGAGGGACGCGATGATAGCTCTAGTGCTTACACCACTCTTTTAAGAACTGCTTTGTTCGGACCTGATGCGGCCGGTGTGGCGGGACCTATAACGCCGGAGAAGAGGGAGTCTCCGTCGATGACATTGCCGAGTAGGAATATTTTTAGGTATAAGACGGAGACAAGGCAGTCCATGCATTCGCTTTCGCCGTTTATGTCTGATGATGTTGTTCCCGGTGTTAATCAGATTCCGGTTAAGGCGCCAAGGAAGGTTCCTCGATCGCCTTATAAGGTTTTGGATGCACCTGCTTTGCAAGACGATTTTTATCTGAATCTGGTGGATTGGTCTTCGCACAATGTGTTGGCGGTTGGTCTGGGTAACTGCGTTTATCTATGGAATGCTTGTAGCAGTAAAGTGACTAAATTATGTGATTTAGGGGTTGATGACTGTGTTTGTTCCGTTGGCTGGGCACAGCGTGGTACTCATCTTGCTGTTGGAACTAACAATGGTAAAGTTCAGATTTGGGATGCAGCACGATGCAAGAAGATAAGATCTATGGAAGGGCATCGGTTACGCGTCGGAGCCTTAGCATGGAGTTCATCTCTTTTGTCCTCTGGTGGACGGGATAAGAATATTTATCAACGAGATATACGCACACAAGAAGATTTTGTTAGTAAACTGTCTGGACACAAATCAGAGGTTTGTGGACTGAAGTGGTCGTATGATAACCGTGAGTTGGCATCTGGAGGAAACGACAACAAATTGTTTGTTTGGAATCAACACTCGACCCAGCCTGTCCTGAAATACTGTGAGCACACGGCTGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTATGGTCCAAAAATGTCAATGAACTAGTAAGCACACATGGTTACTCCCAAAACCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACAGGCCATACTTATAGGGTTCTTTATCTCGCCATCTCTCCAGATGGACAGACTATTGTGACTGGAGCTGGAGATGAGACACTTAGGTTCTGGAATGTATTCCCTTCCCCTAAATCACAGAATACTGAAAGTGAAATCGGAGCATTATCTCTTGGAAGAACTACTATTAGGTGA 1431 0.4563 MDGPTGNRRDTPPSSISPPPSPSPENLRHVERMINSNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEGRDDSSSAYTTLLRTALFGPDAAGVAGPITPEKRESPSMTLPSRNIFRYKTETRQSMHSLSPFMSDDVVPGVNQIPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03040 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 321 - -
Vifa4g03040 476 FunFam FIZZY-related 2 isoform 1 154 454 - -
Vifa4g03040 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Vifa4g03040 476 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 33 466 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vifa4g03040 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 452 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 324 366 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 154 195 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 198 238 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 241 278 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 412 451 IPR001680 GO:0005515
Vifa4g03040 476 SMART WD40_4 282 321 IPR001680 GO:0005515
Vifa4g03040 476 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g03040 476 SUPERFAMILY WD40 repeat-like 165 452 IPR036322 GO:0005515
Vifa4g03040 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 452 - -
Vifa4g03040 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 247 IPR001680 GO:0005515
Vifa4g03040 476 Gene3D - 147 456 IPR015943 GO:0005515
Vifa4g03040 476 ProSitePatterns Trp-Asp (WD) repeats signature. 438 452 IPR019775 -
Vifa4g03040 476 Pfam Anaphase-promoting complex subunit 4 WD40 domain 206 262 IPR024977 -
Vifa4g03040 476 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Vifa4g03040 476 Pfam WD domain, G-beta repeat 326 366 IPR001680 GO:0005515
Vifa4g03040 476 Pfam WD domain, G-beta repeat 415 451 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03040 Vifa-Chr4 979932007 979937631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03040 225 454 Miscellaneous Gene Families AT5G08390 21.459 1.84e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03040 K03364 - gmx:100780928 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03040 4 979932007 979937631 Vifa4g03040 4 979932007 979937631 ECH