Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02823 ATGGATCAGTTGTCGGCGATCAGCGAGAATCTGGCGGAGATCGACGGACGCGTCGCCGACAATTTCCGCGTTCTATCAAATGGATTTCAGAAACTGGAGAAGATTAAGGATTCCAGTAGGCAGAGCAGGCAATTGGAAGAGCTCACGGAGAAAATGCGAGAGAGTAAAGGGCTTATTAAAGAGTTCGATAAAGAAGTAAAAGTTTTGGAGTCTAGATTTGACAGAGAAACTAACAAATATTTGAATGAGAAAAAGCAGTCAATGATCAAAGAGTTAAATTCATATGTTGCTTTGAAGAAACAATATGCTACAAATATTGAGCATAAGAAAATTGAACTCTTTGAGGGGCCCAATGAAGGTTACACGGAAGAAAATGTCTTGCTAGCTTCCTCTATGTCAAATGAACAGCTAATGGATCAAGGGAATCGGATGATGGATGACACGGATCAAGCCATTGAGAGGGGAAAAAGGATTGTTCAAGACACGGTTAATGTTGGTACCGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTGAATGAGCTGGATTCTATCCATTTCTCTATAAAGAAAGCATCTAAGTTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGCATTGCTTTTCCTCATTGTCATTGGAGTAATTGCTATCATTATTGTGAAGCTTGTTCATCCAGGAAACAAGGACATTCGCGACATTCCAGGATTAGCTCCTCCTGTCATGAACAACAGGAGACTGCTTTGGAATCACAGTTGA 789 0.4157 MDQLSAISENLAEIDGRVADNFRVLSNGFQKLEKIKDSSRQSRQLEELTEKMRESKGLIKEFDKEVKVLESRFDRETNKYLNEKKQSMIKELNSYVALKKQYATNIEHKKIELFEGPNEGYTEENVLLASSMSNEQLMDQGNRMMDDTDQAIERGKRIVQDTVNVGTETAAALKAQTEQMSRVVNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPGNKDIRDIPGLAPPVMNNRRLLWNHS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02823 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Vifa4g02823 262 SUPERFAMILY SNARE fusion complex 132 205 - -
Vifa4g02823 262 Gene3D - 133 212 - -
Vifa4g02823 262 FunFam novel plant SNARE 11 133 212 - -
Vifa4g02823 262 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Vifa4g02823 262 SMART tSNARE_6 137 204 IPR000727 -
Vifa4g02823 262 Pfam Sec20 150 231 IPR005606 GO:0005484|GO:0006890
Vifa4g02823 262 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 25 231 - -
Vifa4g02823 262 Coils Coil 45 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02823 Vifa-Chr4 903578208 903582044 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02823 K08494 - gmx:100786429 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02823 4 903578208 903582044 Vifa4g02823 4 903578208 903582044 ECH