Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02821 ATGAAGCCATATTTCCATCTTAAAGCCAAGAGTTCATTGCAAGTAGCACACACTTTCAAATCTGAAGTGAACATAAATGAGAAATATGAGAAGGTGCATGCTCCATCAGTTGTTCATAGTAACCATGATGGTTCGAAACGAGTCCCGGTGTTTGTGATGCTGCCACTTGACACAGTAACAATGGGAGGAAACTTGAATAAACCAAGAGCAATGAATGCTAGTTTGATGGCTTTGAAAAGTGCTGGAGTTGAGGGGGTTATGGTTGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTGAAGTATAATTGGGAAGCTTATGCTGAGCTTGTGCAAATGGTGCAAAAGCTTGGTTTGAAGATTCAAGTTGTTATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGTGTTCCTTTACCTCCATGGGTGATGGAAGAGATCAGCAAGAACCCTGATATAGTTTACACAGACCGATCCGGGAGGAGGAATCTCGAGTATATATCATTGGGCTGTGATTCAGTGCCGGTGCTAAAAGGAAGAACTCCCCTCCAAGTCTATGCGGACTACATGAGGAGCTTTCGCGACAGATTCAGTGATTACTTAGGCAGTGTCATCTCGGAAGTGCAAGTAGGAATGGGTCCATGTGGGGAGCTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAAGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCGGCCGAGGCTATCGGAAAAAAGGAATGGGAAAAGGCGTTCTTTCTGGGATGGTACTCTGGTAAATTGTTGGAACACGGCGAGAAGATCCTTATATCAGCGAAAGAAATATTCCAAAGTTCTGGTGTGAAACTATCTGGGAAAATCGCTGGAATCCATTGGCATTACAGATCAAGATCGCACGCGGCTGAACTAACTGCTGGATACTATAATACTCGACATACTGATGGATACCTTCCAATAGCAAAAATGTTTGCAAAGCATGATGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAGCCTGATCACGCTAACTGCTCGCCAGAAGGGTTAGTTCACCAAGTAAAGACTGCGACAAGAAAGGCTAGAATAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGACGCAGGCGGATACGCTCAAGTTTTGTCGACTAGTATGTCCGACTCAAGCAGTGGATTGGCTGCATTTACATACTTGAGAATGAATAAAAAGTTGTTCGAAGGTGATAACTGGCGGCACCTAGTGAATTTTGTCAGAAATATGTCTGAAGGCGGTAGGAGACAAAGACTTCCAGATTCCGATTCACGCGGAAGTGATATTTATGTTGGGCACATCAAGAAAACTAAAGAGCATAAACAAGAGGTTGATGCTGTTGCTGTTTGA 1446 0.4322 MKPYFHLKAKSSLQVAHTFKSEVNINEKYEKVHAPSVVHSNHDGSKRVPVFVMLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQKLGLKIQVVMSFHQCGGNVGDSCSVPLPPWVMEEISKNPDIVYTDRSGRRNLEYISLGCDSVPVLKGRTPLQVYADYMRSFRDRFSDYLGSVISEVQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMKASLAAAAEAIGKKEWEKAFFLGWYSGKLLEHGEKILISAKEIFQSSGVKLSGKIAGIHWHYRSRSHAAELTAGYYNTRHTDGYLPIAKMFAKHDVVFNFTCMEMKDREQPDHANCSPEGLVHQVKTATRKARIELAGENALERYDAGGYAQVLSTSMSDSSSGLAAFTYLRMNKKLFEGDNWRHLVNFVRNMSEGGRRQRLPDSDSRGSDIYVGHIKKTKEHKQEVDAVAV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02821 481 Pfam Glycosyl hydrolase family 14 51 258 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 Pfam Glycosyl hydrolase family 14 269 438 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 Gene3D Glycosidases 41 267 - -
Vifa4g02821 481 SUPERFAMILY (Trans)glycosidases 45 445 IPR017853 -
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 298 314 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 103 121 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 125 146 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 315 326 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 82 96 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 333 356 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 370 392 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 Gene3D Glycosidases 268 478 - -
Vifa4g02821 481 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 19 266 IPR001554 GO:0000272|GO:0016161
Vifa4g02821 481 ProSitePatterns Beta-amylase active site 1. 129 137 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02821 Vifa-Chr4 903237137 903238997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02821 3 479 Glycoside Hydrolase AT4G17090 68.421 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02821 K01177 - csin:114285056 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02821 4 903237137 903238997 Vifa4g02821 4 903237137 903238997 ECH