Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02783 ATGGCCACCACACCTTCACGTGCCTTTCTAAACACAGTCCAAGAAATCACTCATATCTACTCTTCACTGCCACCTAGACCTTCCATAGAAGAAGTTGAAGCTGCCACTTCTACTCTTGACACCCTTACCAACGTCGAACAAACCAAACTCCATGATATCTCAAACCAAAAACTACCGCAAGATGTTCCTCAAGAGCTTTTCTCTGTTCTTCAACAGCTCAAGAACACCATGGTCCTCTTTCAAAGTCATCAACTCAGAAAAGAAGCTCTTCACCTTCTTCAACTTGAAAAGATGTTTCAAACCTTTGGTGATCTCATTCAAAGAGCTTCTCAATTTGTTTCTCCTGATGATGATGATGATACACAGAAAAAGAAAGTTTCCACTTTAAGAGAAGCTGTGGTTACCTATGAAAAAGATGAACATGAAGAACTTCTAAAGAGTGATGAAGATTTTGAAGCTCAAAAGGGTTCCTCTCTACACAAGCAGCCTTTGATAACAGGAGATGAAAGCATTGAGAAATTGAGTCTAATGAAAGTGGCTACTATGATTGAAAATTGTGCTAATAACAAAGACACAATCCTAGAGCTTAGAGGAAAATTAGTGGATCAAATGGAGTGGTTACCACTATCAATTGGGAAACTATCTGATGTAACTCAAATAGACCTATCTGAAAACAGCATCATGGCTCTTCCAACAACAATCATAGGCCTAAAAGCTTTAACAAAGCTTGATCTTCATTCAAACCAGCTCATAAACCTTCCAAACTCGTTCGGCGAATTGATAAACCTAATTGAACTTGACCTACATGCCAATAGACTGAAATCACTTCCTGGTAGTTTCGGAAACTTGACAAATCTCGTTGATCTTGACTTAAGTTCTAATGGTTTCAAACAGTTACCTGAGTCAATTGGGAGTTTAATCAGCTTAAAGAGACTAAACGCTGAGACGAATGTGATTGAGGAACTACCTTTCACAATTGGAAATTGTTCTTCACTAAGTGTGTTGAAGCTAGATTTCAATGAACTCAAAGCACTTCCCGAGACAATAGGGAAACTTGAGAGTTTGGAGATTCTCACTTTGCATTATAATAGAATCAAGAAGTTGCCTACAACAATAGGGAATCTAAGTAATTTGAAGGAACTTGATGTTAGTTTCAACGAACTAGAATTCGTACCGGAAAATCTTTGTTTCGCGGTTGGTTTGAAGAAACTTAACTTGGGGAAGAATTTTGCTGATCTAAGAGCATTGCCAAGATCAATCGGAAACCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAAGCTTTGCCTGAGTCTTTTAGGTTCTTGTCTAAGTTGAGAGTTTTTCGGGCTGATATAACTCCTCTTGAGTTACCACCTAAAGAAGTTGTCAAGTTGGGTGCTCAGGAAGTTGTGAAGTATATGGCTGATTATGTGACCAATAGGGATGCAAAATTCTTGTCAGTGAAGAAGAAAAAGAAGGGAATTTGGTTTTGGTTTTGTTCCATATGTTGGCCTAAGCAAGAATGA 1539 0.3821 MATTPSRAFLNTVQEITHIYSSLPPRPSIEEVEAATSTLDTLTNVEQTKLHDISNQKLPQDVPQELFSVLQQLKNTMVLFQSHQLRKEALHLLQLEKMFQTFGDLIQRASQFVSPDDDDDTQKKKVSTLREAVVTYEKDEHEELLKSDEDFEAQKGSSLHKQPLITGDESIEKLSLMKVATMIENCANNKDTILELRGKLVDQMEWLPLSIGKLSDVTQIDLSENSIMALPTTIIGLKALTKLDLHSNQLINLPNSFGELINLIELDLHANRLKSLPGSFGNLTNLVDLDLSSNGFKQLPESIGSLISLKRLNAETNVIEELPFTIGNCSSLSVLKLDFNELKALPETIGKLESLEILTLHYNRIKKLPTTIGNLSNLKELDVSFNELEFVPENLCFAVGLKKLNLGKNFADLRALPRSIGNLEMLEELDISDDQIKALPESFRFLSKLRVFRADITPLELPPKEVVKLGAQEVVKYMADYVTNRDAKFLSVKKKKKGIWFWFCSICWPKQE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02783 512 Pfam Leucine rich repeat 331 388 IPR001611 GO:0005515
Vifa4g02783 512 Pfam Leucine rich repeat 255 295 IPR001611 GO:0005515
Vifa4g02783 512 ProSiteProfiles Leucine-rich repeat profile. 285 306 IPR001611 GO:0005515
Vifa4g02783 512 ProSiteProfiles Leucine-rich repeat profile. 354 375 IPR001611 GO:0005515
Vifa4g02783 512 SUPERFAMILY L domain-like 203 455 - -
Vifa4g02783 512 PANTHER LEUCINE-RICH REPEAT-CONTAINING 288 468 - -
Vifa4g02783 512 SMART LRR_bac_2 329 348 - -
Vifa4g02783 512 SMART LRR_bac_2 306 325 - -
Vifa4g02783 512 SMART LRR_bac_2 423 442 - -
Vifa4g02783 512 SMART LRR_bac_2 352 371 - -
Vifa4g02783 512 SMART LRR_bac_2 375 394 - -
Vifa4g02783 512 SMART LRR_bac_2 237 256 - -
Vifa4g02783 512 SMART LRR_bac_2 260 279 - -
Vifa4g02783 512 Gene3D Ribonuclease Inhibitor 160 494 IPR032675 -
Vifa4g02783 512 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515
Vifa4g02783 512 FunFam Plant intracellular Ras-group-related LRR protein 4 173 481 - -
Vifa4g02783 512 ProSiteProfiles Leucine-rich repeat profile. 262 283 IPR001611 GO:0005515
Vifa4g02783 512 SMART LRR_typ_2 423 445 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 237 259 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 329 351 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 375 398 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 214 236 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 283 306 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 352 374 IPR003591 -
Vifa4g02783 512 SMART LRR_typ_2 260 282 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02783 Vifa-Chr4 880346766 880348807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02783 210 438 Receptor kinase-like Gene Family AT3G11080 33.333 5.98e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02783 - - lja:Lj0g3v0066329.1 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02783 4 880346766 880348807 Vifa4g02783 4 880346766 880348807 ECH