Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02563 ATGGCGCAATGGTGGCGCTCCGCCGCCGGTCATCTCCGATCAGCGGAAGCAAACCGCACGCCCTCCTTATCGTCACTCCGTTGTAGTCACTACCACACAATCCAAGCAATCCCGAGAGAAAGCACTGGCAGTAAAGTCGCAGCGAGAGACAGAATGCAAGGTCGAATACCGGCCGTCGTTTTCTTCCAGAACCTTCTTGACAAAACCCCCGACTCACGATCTACGTCAAGGAAACATCTACTCACCGTCGAGAAGAAGCAGATTAAGGCAGTGCTCAATTCCATTGAAGACCCGTTCTTCTGTTCCACCCGGTTTCCGCTCCAGATTCGTGCCGGATCCGGATCCACTCATTTACTCGAAAGCGGAACTATTCATAAGGATAAAGAGAGTGGGAATATTTTGAACTTGGTGTTTGTTTGGGCTGAAGATGGCACGAATTTGAAGGTTGATGTTCCTGTTGTTTTCAAAGGTGAAGATGCTTGCCCCGGTCTTCAGAAAGGTGGTATTTTGAATAAGATCAGACCTAGTCTTACATATCTTTGTCCTTCTGAGCACATTCCTTCAAAAATTGAGGTGGATATCAGCAATTTAGATATTGAAGATAGAATATTCATGCGAGATATTGAAGTTCATCCATCTTTGAAGCTTCTGAGTAAGAATGAAAACATGCCCATATGTAAAATAGTTTCAACAAGTGTGGGAAACCAAGAACCATTTGTTGAAAGTGCATCTGATGAAAGAAATGCAGAGACTTCCAAATAA 762 0.4462 MAQWWRSAAGHLRSAEANRTPSLSSLRCSHYHTIQAIPRESTGSKVAARDRMQGRIPAVVFFQNLLDKTPDSRSTSRKHLLTVEKKQIKAVLNSIEDPFFCSTRFPLQIRAGSGSTHLLESGTIHKDKESGNILNLVFVWAEDGTNLKVDVPVVFKGEDACPGLQKGGILNKIRPSLTYLCPSEHIPSKIEVDISNLDIEDRIFMRDIEVHPSLKLLSKNENMPICKIVSTSVGNQEPFVESASDERNAETSK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02563 253 CDD Ribosomal_L25_TL5_CTC 33 99 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vifa4g02563 253 SUPERFAMILY Ribosomal protein L25-like 31 234 IPR011035 GO:0006412
Vifa4g02563 253 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 24 231 - -
Vifa4g02563 253 Gene3D Ribosomal protein L25, beta domain 145 223 IPR037121 -
Vifa4g02563 253 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 144 231 - -
Vifa4g02563 253 Pfam Ribosomal protein TL5, C-terminal domain 147 230 IPR020057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02563 Vifa-Chr4 775798404 775800693 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02563 K02897 - gmx:100802599 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02563 4 775798404 775800693 Vifa4g02563 4 775798404 775800693 ECH