Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02505 ATGGCTAGAATCCTAAAACCATCCAAGTGGTTCTCTAACAAAGGTCTTAAACTTAGGTCAAGATCTTCCAATTCATTATCATCATCATGCTCTCCAAAATCTCCAATTTCATTGTCTACCGCACCAAAAAATAACAAGAATGAAGATGATATGGGATTAAGAGAGGTTTTCAATCACTTTGATAGTGATGGAGATGGAAAAATTTCAGCCTATGAGTTAAGGTCATATTTTGGGTCAATTGGAGAGCACATGTCTCATGAGGAAGCTGAGAGGGTGATTCAATATCTCGATGCCGACGGCGACAACTTGTTAGATTTCAATGATTTTATTAAGTTGATGAAAGGTGAAGAAGGAAGTGATGATGATAAAGATCTTAGAAAGGCTTTTGAAATGTTTGTGTGGGAAGAAAAAGAAGATTGTATTACACCAAAAGGGTTGCAAAGAATGTTGCAACGTCTTGGAGATAAAAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATATTGATCATAATGGAGTTCTTGATTTCAATGAGTTTCATCAAATGATGGCTTAG 564 0.3599 MARILKPSKWFSNKGLKLRSRSSNSLSSSCSPKSPISLSTAPKNNKNEDDMGLREVFNHFDSDGDGKISAYELRSYFGSIGEHMSHEEAERVIQYLDADGDNLLDFNDFIKLMKGEEGSDDDKDLRKAFEMFVWEEKEDCITPKGLQRMLQRLGDKRSYEECVVMIDAFDIDHNGVLDFNEFHQMMA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02505 187 MobiDBLite consensus disorder prediction 16 49 - -
Vifa4g02505 187 FunFam Calmodulin-2 A 43 187 - -
Vifa4g02505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vifa4g02505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 157 187 IPR002048 GO:0005509
Vifa4g02505 187 MobiDBLite consensus disorder prediction 16 46 - -
Vifa4g02505 187 CDD EFh 53 114 IPR002048 GO:0005509
Vifa4g02505 187 SMART efh_1 88 116 IPR002048 GO:0005509
Vifa4g02505 187 SMART efh_1 161 187 IPR002048 GO:0005509
Vifa4g02505 187 SMART efh_1 52 80 IPR002048 GO:0005509
Vifa4g02505 187 Gene3D - 118 187 - -
Vifa4g02505 187 Pfam EF-hand domain pair 139 186 IPR002048 GO:0005509
Vifa4g02505 187 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vifa4g02505 187 PANTHER CALCIUM BINDING PROTEIN 48 113 - -
Vifa4g02505 187 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Vifa4g02505 187 ProSitePatterns EF-hand calcium-binding domain. 170 182 IPR018247 -
Vifa4g02505 187 Gene3D - 34 117 - -
Vifa4g02505 187 Pfam EF-hand domain pair 53 114 IPR002048 GO:0005509
Vifa4g02505 187 SUPERFAMILY EF-hand 39 186 IPR011992 -
Vifa4g02505 187 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02505 Vifa-Chr4 756081953 756082516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02505 6 187 EF-hand Containing Proteins AT3G50770 50.754 1.76e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02505 K13448 - gmx:100306370 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02505 4 756081953 756082516 Vifa4g02505 4 756081953 756082516 ECH