Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02468 ATGTTTCTTCTTAGAAAGCAAACCCAGAATCAGCCAGAGAATGGTTCCTCAAATCATGATGCTAAGGTGGCTGAACTAAGAACTGCTATTGGGCCCTTATCCGGGCGTCGATTGATGTATTGCACAGATGCTTGTTTAAGGAGGTATTTAGAAGCACGGAATTGGAATGTTGATAAAACCAAGAAAATGCTGGAAGAATCACTTAAGTGGAGATCTAGTTATAAGCCTGAGGAAATCCGTTGGGCTGAAGTAGCACATGAAGGCGAGACGGGGAAAGTATCTCGAGCTAACTTTCATGATAGACTTGGGAGGACAGTGCTTATTATGAGACCAGGGATGCAGAACACAGCATCACCCGAAAATAATATCAAGCATTTAGTCTATCTGTTGGAAAATGCTGTACTTAATCTTTCCGATGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTTACATTTGGCACAAACATTGCTATTAAAACTGCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATTGCTTTTCTGTATAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCTGTGAAATACTTCCTGGATCCCAAGACAGCCCAGAAGGTAAAGTTTGTTTATCTCAACAACAAAGACAGTGTGGAACTGATGAAATCACTCTTCGACATGGAAAACCTTCCTAGTGAATTTGGCGGAAAAGCTACTTTACAGTATGACCATGTAGAGTTCTCAAAGTTAATGACTGAGGATGATGCGAAAACTGCAAAGTTCTGGGGACTTAATGACGAGAAGCCCTTCACTACTAAGAATGGCCATGGCGGGGCAGAAGTAGCACCAGAACCAGTATAG 870 0.4126 MFLLRKQTQNQPENGSSNHDAKVAELRTAIGPLSGRRLMYCTDACLRRYLEARNWNVDKTKKMLEESLKWRSSYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTASPENNIKHLVYLLENAVLNLSDGQEQMSWLIDFTGFTFGTNIAIKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVKYFLDPKTAQKVKFVYLNNKDSVELMKSLFDMENLPSEFGGKATLQYDHVEFSKLMTEDDAKTAKFWGLNDEKPFTTKNGHGGAEVAPEPV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02468 289 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vifa4g02468 289 SUPERFAMILY CRAL/TRIO N-terminal domain 8 82 IPR036273 -
Vifa4g02468 289 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g02468 289 PANTHER GH16843P 8 270 - -
Vifa4g02468 289 CDD SEC14 99 240 IPR001251 -
Vifa4g02468 289 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Vifa4g02468 289 Pfam CRAL/TRIO, N-terminal domain 35 66 IPR011074 -
Vifa4g02468 289 SMART sec14_4 87 242 IPR001251 -
Vifa4g02468 289 Gene3D - 3 273 IPR036865 -
Vifa4g02468 289 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Vifa4g02468 289 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vifa4g02468 289 MobiDBLite consensus disorder prediction 1 18 - -
Vifa4g02468 289 SUPERFAMILY CRAL/TRIO domain 82 256 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02468 Vifa-Chr4 743488483 743490996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02468 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.805 2.21e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02468 K26544 - gmx:100800024 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02468 4 743488483 743490996 Vifa4g02468 4 743488483 743490996 ECH