Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02462 ATGAACACGCAAGGGAAGCCTCGTCTCGCTAAATTCTATGAATTTCGGCCTGTGGAAAAGCAGCAGGAAATTATTCGAAATGTGTTTGCAGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCTGAGTCCATCTTTGGCGCGGATGCTCGACTTGTCTACAAGCACTTTGCAACTCTATACTTTGTGCTCATATTTGATGGTTCTGAAAATGAGCTTGCTATGCTTGATTTGATTCAAGTCTTTGTTGAAACACTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATGTCGTGTTCAACTACAGTAAGATGCATACTATACTAGATGAGATTATTTTCGGAGGTCAGGTGTTAGAGACAAGTTCAACTGAGGTTATGAAGGCTGTTGAAGAAATATCAAAGCTTGAAGCCGCATCCAGTGCAATCAATCTTGTTTCGAAGTCTGTTTCTAGTTGGAGGTCGCGATAG 480 0.4125 MNTQGKPRLAKFYEFRPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESIFGADARLVYKHFATLYFVLIFDGSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHTILDEIIFGGQVLETSSTEVMKAVEEISKLEAASSAINLVSKSVSSWRSR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02462 159 FunFam AP complex subunit sigma 1 149 - -
Vifa4g02462 159 ProSitePatterns Clathrin adaptor complexes small chain signature. 55 65 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vifa4g02462 159 CDD AP3_sigma 1 138 IPR027155 GO:0006896|GO:0030123
Vifa4g02462 159 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 1 140 IPR016635 GO:0015031
Vifa4g02462 159 Coils Coil 122 142 - -
Vifa4g02462 159 Gene3D - 1 153 - -
Vifa4g02462 159 PIRSF AP_complex_sigma 1 149 IPR016635 GO:0015031
Vifa4g02462 159 Pfam Clathrin adaptor complex small chain 1 139 IPR022775 -
Vifa4g02462 159 SUPERFAMILY SNARE-like 2 138 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02462 Vifa-Chr4 741686827 741692726 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02462 K12399 - tcc:18610934 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02462 4 741686827 741692726 Vifa4g02462 4 741686827 741692726 ECH