Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02452 ATGCCTTTAGGGGAAGAATACGAAGATGTCAGGAACCTTAGGAAAACACTCATCAACAACAACGTTAATGCTAGAAATGATTCTTTTTATATTGTACTATGTGTTGTCGTTGTAGCTTTGGGTTCTATCCAATTCGGTTTCACGTGTGGATATACTTCCCCAGCGGAGGAAGAAATGATTCGAGATCTTAATCTCACAATTTCAAAGTTTTCATTATTTGGTTCATTATCCAACATTGGTGCAATGGTAGGAGCAACAGTGAGTGGTCAAATAGCAGGATACTTTGGGCGTAAGGGGTCACTAATAGTTGCAGCAGTCCCAAATATATTTGGATGGATAGCTATTTCCTTGGCAAAAGACACATCGCTTCTATATATCGGAAGATTGTTGGACGGTTTTGGAGTGGGAATAATCTCTTATGTGGTACCAATTTATATAGCTGAGATATCACCACGAACCATGAGGGGTAAATTAGGATCTGTGAACCAACTATCAATTACAATTGGGATTATGGTGGCATATTTGCTAGGCCTATTTTTCAAATGGAGAACGCTAGCACTATTAGGAATTTTGCCTTGTGCAATATTAATACCTGGGCTATATTTCATTCCAGAATCACCAAGATGGTTGGCCCAAAATGGAATGATGGAAAGATTTCAGTCTTCATTACAATCTTTACGAGGACCTACTGCTGATATTACTTTGGAAGCACAAGAAATACAGGGATCATTGGTTTCTAATAACACTACAGATACTGTGCACCTATCTGATCTCAAGAGGAGAAGATACTGGTTTCCTTTGATGGTATGTATGGGATTGCTTGTTTTACAGCAACTTTCTGGTATCAATGCTGTATTTTTCTATGCTAGTAGGATCTTTTCAAGGGCAGGAATTTCATCCAGCGATGCTGCTACATTTGGACTGGGAACTATTCAGGTTGTAGTGACTGCAATCTCTACTGGGTTGGTAGACAAAAGTGGGCGAAGAGTGCTTCTTATAATATCTTGTTCTGTGATGACAATAAGCCTACTCCTTGTTGCTACTGCATTTTATCTACAGGGAATTGTAGCAAATGACTCTGGCATTCATAGAATAATGGGGGTGCTCTCTCTTGTGGGGCTTCTGGTTTTGGTAATTGGTTTCTCCCTTGGTGTTGGACCAATTCCTTGGCTTATAATGTCTGAGATACTTCCACTAAATATTAAGGGCCTTGCTGGAAGTGCAGCAACATTTCTAAATTGGTTTACCGCTTCTCTTGTCACTTTGACTGCAAAATTGCTTCTAAATTGGAGCCATGCAGGAGCATTCACAATTTATGCAATTTTTGCTGCCATCAATCTTGCATTCACACTACTTTGGGTTCCTGAGACTAAGGACAAAACATTGGAAGAAATTCAGGCATCCTTTAGAAGATAA 1416 0.3948 MPLGEEYEDVRNLRKTLINNNVNARNDSFYIVLCVVVVALGSIQFGFTCGYTSPAEEEMIRDLNLTISKFSLFGSLSNIGAMVGATVSGQIAGYFGRKGSLIVAAVPNIFGWIAISLAKDTSLLYIGRLLDGFGVGIISYVVPIYIAEISPRTMRGKLGSVNQLSITIGIMVAYLLGLFFKWRTLALLGILPCAILIPGLYFIPESPRWLAQNGMMERFQSSLQSLRGPTADITLEAQEIQGSLVSNNTTDTVHLSDLKRRRYWFPLMVCMGLLVLQQLSGINAVFFYASRIFSRAGISSSDAATFGLGTIQVVVTAISTGLVDKSGRRVLLIISCSVMTISLLLVATAFYLQGIVANDSGIHRIMGVLSLVGLLVLVIGFSLGVGPIPWLIMSEILPLNIKGLAGSAATFLNWFTASLVTLTAKLLLNWSHAGAFTIYAIFAAINLAFTLLWVPETKDKTLEEIQASFRR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02452 471 SUPERFAMILY MFS general substrate transporter 27 466 IPR036259 -
Vifa4g02452 471 Pfam Sugar (and other) transporter 35 469 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 NCBIfam sugar porter family MFS transporter 23 465 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 PANTHER - 23 466 - -
Vifa4g02452 471 PRINTS Sugar transporter signature 125 144 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 PRINTS Sugar transporter signature 371 392 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 PRINTS Sugar transporter signature 277 287 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 PRINTS Sugar transporter signature 42 52 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 PRINTS Sugar transporter signature 394 406 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02452 471 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 458 IPR020846 GO:0022857
Vifa4g02452 471 CDD MFS_GLUT6_8_Class3_like 32 464 IPR044775 GO:0008643|GO:0051119
Vifa4g02452 471 Gene3D MFS general substrate transporter like domains 24 471 IPR036259 -
Vifa4g02452 471 FunFam sugar transporter ERD6-like 6 25 469 - -
Vifa4g02452 471 ProSitePatterns Sugar transport proteins signature 2. 130 155 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02452 Vifa-Chr4 738625650 738667593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02452 1 470 Organic Solute Cotransporters AT1G75220 61.191 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02452 K03444 - gmx:100801076 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02452 4 738625650 738667593 Vifa4g02452 4 738625650 738667593 ECH