Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02434 ATGAAGAACTTGGCTTCGCTTGCAGCTTCAACCGCAACATTTCCCACCCACCAATTCCCTTTTCAAATTCAACACTCTTTCTTTCCGCTTCGATTCACTACCCGAACCACCTTCCTTCGAAATCCACATCTATCTTGCCAAACCAGACAATGTCGTTCCAACGCATTTTCCACCAAACAAGACCTTATCGCACTTCAAGAAGAAGAAGAGGAAGAAGAAGAAGATGATGATGAAGAACAAAGAGTTTCATATTCAGACGATGATACATCTTTCTTATCCCTCAGCGAGAAACCCGACCGCAATTTGGGTTTGCTAGATGATTACGAGACTGAAGAACTCGGTTATGATTGCGGTCCCAATCACCGAAGCGGGTATGTGGCTTTACTTGGAAAACCAAATGTTGGGAAGAGTACACTCGCGAACCAAATGGTTGGCCAAAAATTGTCTATAGTTACGGATAAACCTCAAACTACAAGGCATCGGATTCTTTGTATATGTTCCGGCTCAGATTATCAGATGGTACTTTATGATACTCCTGGTGTTTTACAAGAGAAAAGGCACAAGCTAGACTCAATGATGATGCAAAATGTTCGCAGCGCTGCAGTTAATGCTGACTGTGTACTGTTTCTCGTTGATGCATCTAAAGCGCCTGAAAAAATCGATGAAGTGTTAGAACAAGGCATAGGAAACCCCAAGGATAAACCCCCCACTCTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGATGAGGTTATACCAGTTAGTTCCAAGTACGGTCACGGGGTTGAAGATGTCAAGAACTGGATACTATCAAAGCTTCCTAATGGACCAGCTTATTATCCAAAGGACATTATCAGTGAACATCCTGAAAGATTTTTTGTAGCTGAAATCATAAGAGAAAAGATTTTTTTGCAGTATCGAAATGAAATCCCCTATGTGTGTCAGGTGAATGTTCTAAGCTATAAGACCCGACCAAAAGCAAAAGATTTTATACAGGTGGAGATTTTGGTTGAGAGAAACTCCCAGAAGATTATCGTTATTGGAAAAGAAGGAAAAGCTTTAAAACTACTTGCAACAGCTGCCCGCCTTGACGTTGAAGATTTTCTGCAGAAGAAAGTTTTTCTTGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTTAAGCACTCTGGTTATGGGGGTCAAATAGGTGTTGTATAA 1266 0.4044 MKNLASLAASTATFPTHQFPFQIQHSFFPLRFTTRTTFLRNPHLSCQTRQCRSNAFSTKQDLIALQEEEEEEEEDDDEEQRVSYSDDDTSFLSLSEKPDRNLGLLDDYETEELGYDCGPNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGSDYQMVLYDTPGVLQEKRHKLDSMMMQNVRSAAVNADCVLFLVDASKAPEKIDEVLEQGIGNPKDKPPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSSKYGHGVEDVKNWILSKLPNGPAYYPKDIISEHPERFFVAEIIREKIFLQYRNEIPYVCQVNVLSYKTRPKAKDFIQVEILVERNSQKIIVIGKEGKALKLLATAARLDVEDFLQKKVFLEIQVKVKENWRQDEGFLKHSGYGGQIGVV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02434 421 ProSiteProfiles Type-2 KH domain profile. 323 400 IPR004044 GO:0003723
Vifa4g02434 421 Gene3D - 304 418 IPR015946 -
Vifa4g02434 421 FunFam GTPase Era 119 302 - -
Vifa4g02434 421 CDD KH-II_Era 312 398 - -
Vifa4g02434 421 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 122 292 IPR030388 GO:0005525
Vifa4g02434 421 Pfam KH domain 326 403 IPR004044 GO:0003723
Vifa4g02434 421 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 299 414 IPR009019 GO:0003723
Vifa4g02434 421 PANTHER GTPASE ERA 67 406 IPR005662 GO:0003723|GO:0005525
Vifa4g02434 421 MobiDBLite consensus disorder prediction 67 83 - -
Vifa4g02434 421 Gene3D - 119 303 IPR027417 -
Vifa4g02434 421 Hamap GTPase Era [era]. 121 414 IPR005662 GO:0003723|GO:0005525
Vifa4g02434 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 324 IPR027417 -
Vifa4g02434 421 FunFam GTPase Era 303 417 - -
Vifa4g02434 421 NCBIfam GTPase Era 124 397 IPR005662 GO:0003723|GO:0005525
Vifa4g02434 421 CDD Era 121 290 IPR030388 GO:0005525
Vifa4g02434 421 Pfam 50S ribosome-binding GTPase 126 243 IPR006073 GO:0005525
Vifa4g02434 421 NCBIfam small GTP-binding protein domain 126 282 IPR005225 GO:0005525
Vifa4g02434 421 MobiDBLite consensus disorder prediction 67 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02434 Vifa-Chr4 733975847 733979527 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02434 K03595 - gmx:100815820 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02434 4 733975847 733979527 Vifa4g02434 4 733975847 733979527 ECH