Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02402 ATGTCTGCACCAGAATCTCCCAGGCCAGCTCTTGACAAGGTCGACCGTGTTGGATCATTGAAGAAGAAGCTGAGGGATTCCCTCACGAGGATGAGTAGGCGAAGCAGTAGCAAGGTTATGTCGGTTGAGATTGAAGATATCCGTGATGCCGATGATTTGAAAGCTGTTGATGAATTCCGTCAGGCTCTTGTGTTGGATGAACTTCTTCCAGAGAAGCATGATGACTATCATATGTTACTCAGATTCCTGAGAGCAAGGAAATTCGACATTGAGAAATCAAAGCAAATGTGGTCCGAGATGCTTCAATGGAGGAAGGAATTTGGTGCTGACACTATTGTTCAGGATTTTGAATTTGAGGAGTTTGAGGAAGTGTTACAATATTATCCTCATGGACATCATGGAGTCGATAAAGATGGACGACCGATTTACATTGAGAGGTTGGGCCAAGTTGATGCCACCAAGTTGATGCAAGTCACAACCCTTGATAGATATATCAAATACCATGTCAAGGAATTCGAAAGGACATTTGATCTCAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATTGATCAAAGCACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCCAGGGAGCTTATCACGCGCCTTCAGAAGATCGATGGTGACAATTATCCTGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACTGTTAAATCCTTCCTTGACCCAAAGACCACAGCCAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAGTTGCTTGAAATGATTGATGCAAGTGAATTGCCAGAGTTTTTAGGAGGTACTTGTACCTGCGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATCAAGATATTTATAGGATGGTTCAGAATGGCGAGCACAAATGCTCAAAGAAATGTGAGGCACCTATCGTAGAAGAGAAAACAATTCCTGAGGAAAGCGCGGCTTCCAAAATGGAGGCAGTTTTCACTGCACAGTTGTCCTCTGCACAAATGTCTGTCTTTGCAACGGCCCCTTCTATAAAAGCTTGCAAGTACGAGGATTTTGTCCCTATGGCTGAGAAAAATGCTTGGAAAAAGGTGGAAGAAAATAACACCTTAGCAGTATCAAAAGTTGGAGTAGAATCTTTCGTCATGCCTGATTCGTACAAGATTCACGAAAAAGTGAACTCACAGATTTTCACCGGCGTGATGGCCTTTGTGATGGGAATCGTAACAATGGTGAGGATGACACGAACCATGCCGAAGAAGCTCACTGATGCGAACTTCTACTCCAATTCTGTTTACTCTGGTGATGACAATAAAAACCAAGACTCTAGTGATCAAATGACTAACCCTACCATATCTGCTCAAGAGTTCATGACTGTCATGAAACGTATGGCTGAGTTGGAAAATAAAATGGGTAACATGAACCAAAATGCTTCCATGCCACCTGAGAAGGAGGAAATGCTTAACGCTGCCATAAGTCGCGCTGATGCTCTAGAGCAAGAACTTATGTCAACTAAGAAGGCTTTGGAGGACTCACTTTCCAAACAAGAGGAGCTTTCAGCTTACATCGATAAAAAGAAAAAGAAGAAGAAGTTGTTTGCTTGGTCATAA 1677 0.4293 MSAPESPRPALDKVDRVGSLKKKLRDSLTRMSRRSSSKVMSVEIEDIRDADDLKAVDEFRQALVLDELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSEMLQWRKEFGADTIVQDFEFEEFEEVLQYYPHGHHGVDKDGRPIYIERLGQVDATKLMQVTTLDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEMIDASELPEFLGGTCTCADQGGCMRSDKGPWKDQDIYRMVQNGEHKCSKKCEAPIVEEKTIPEESAASKMEAVFTAQLSSAQMSVFATAPSIKACKYEDFVPMAEKNAWKKVEENNTLAVSKVGVESFVMPDSYKIHEKVNSQIFTGVMAFVMGIVTMVRMTRTMPKKLTDANFYSNSVYSGDDNKNQDSSDQMTNPTISAQEFMTVMKRMAELENKMGNMNQNASMPPEKEEMLNAAISRADALEQELMSTKKALEDSLSKQEELSAYIDKKKKKKKLFAWS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02402 558 Gene3D - 108 319 IPR036865 -
Vifa4g02402 558 FunFam SEC14 cytosolic factor 108 320 - -
Vifa4g02402 558 Coils Coil 479 499 - -
Vifa4g02402 558 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Vifa4g02402 558 SMART sec14_4 120 291 IPR001251 -
Vifa4g02402 558 SUPERFAMILY CRAL/TRIO domain 119 316 IPR036865 -
Vifa4g02402 558 SUPERFAMILY CRAL/TRIO N-terminal domain 50 116 IPR036273 -
Vifa4g02402 558 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Vifa4g02402 558 CDD SEC14 124 289 IPR001251 -
Vifa4g02402 558 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Vifa4g02402 558 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Vifa4g02402 558 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Vifa4g02402 558 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 549 - -
Vifa4g02402 558 Pfam CRAL/TRIO, N-terminal domain 71 98 IPR011074 -
Vifa4g02402 558 Gene3D - 24 107 - -
Vifa4g02402 558 Coils Coil 510 541 - -
Vifa4g02402 558 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02402 Vifa-Chr4 725711911 725715106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02402 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 1.83e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02402 K26544 - gmx:100785716 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02402 4 725711911 725715106 Vifa4g02402 4 725711911 725715106 ECH