Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02314 ATGGTGCTCGAGGCAACGATGATCTGTATTGACAACTCTGAATGGATGCGTAACGGCGATTACTCTCCTTCTCGATTTCAAGCCCAATCCGACGCTGTAAGTCTCATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTCTCACTATGGCGGGGAAAGGCGTTCGGGTTTTGGCTACTCCTACCAGTGATTTGGGCAAAATCTTAGCTTGTATGCATGGTCTAGAAATAGGCGGTGGGATGAACCTAGCTGCTGGAATTCAGGTGGCACAGTTGGCTCTTAAGCATCGACAGAATAAGAAGCAGCAGCAAAGGATTATCGTCTTTTCTGGAAGTCCTGTCAAGCACGAGAAGAAAATGTTGGAGATGATTGGGAGAAAGTTGAAAAAGAATAGTGTAGCACTTGACATTGTCAACTTTGGGGAAGATGACGAGGGGAAGACGGAGAAGCTTGAAGCACTCCTTGCAGCAGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCCGGTCCAAATGCTCTTTCAGACGTACTTATAAGTACACCTATTTTTACTGGAGATGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCAGCAGCAGCTTCTGCAGGTGGTGCATCTGGATATGATTTTGGTGTTGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCTAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGCGAACAGCAAGCTACTTCCCAGGATGCAACTATGACTGAGCAAACCAGTACTGCAGCTTCTGAAGTTGAGACTAAGACAACTGACATGATGGTTAGTGACGATGAGAATGCTCTACTACAACAGGCCCTTGCAATGTCGATGGATGATCCTGCAGTTAGCCATGATGTAAGAGATGCAGATATGTCTGAAGCTGCTACAGAGGACCCTGAGTTGGCTCGAGCTTTCCAATTGTCAGTATCAGACCCCCCCAATGACACAGTGGGTAGATTGTTGGCGGACCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGATCCCTCTGTCAAAGATTTGCTGGCTTCTATGCAAAATCAGTCTGAGTCTCAGAAGAAGAATGACGAGGGACCAAATGAGGAGGAGAAGAAGTAA 1206 0.466 MVLEATMICIDNSEWMRNGDYSPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLEIGGGMNLAAGIQVAQLALKHRQNKKQQQRIIVFSGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEDDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGASGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQATSQDATMTEQTSTAASEVETKTTDMMVSDDENALLQQALAMSMDDPAVSHDVRDADMSEAATEDPELARAFQLSVSDPPNDTVGRLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSESQKKNDEGPNEEEKK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02314 401 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Vifa4g02314 401 FunFam 26S proteasome regulatory subunit N10 220 308 - -
Vifa4g02314 401 SUPERFAMILY vWA-like 4 175 IPR036465 -
Vifa4g02314 401 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 391 IPR027040 GO:0006511|GO:0008540
Vifa4g02314 401 SMART uim 326 345 IPR003903 -
Vifa4g02314 401 SMART uim 222 241 IPR003903 -
Vifa4g02314 401 SMART uim 294 313 IPR003903 -
Vifa4g02314 401 MobiDBLite consensus disorder prediction 241 289 - -
Vifa4g02314 401 MobiDBLite consensus disorder prediction 363 401 - -
Vifa4g02314 401 CDD PSMD4_RAZUL 350 389 - -
Vifa4g02314 401 MobiDBLite consensus disorder prediction 259 289 - -
Vifa4g02314 401 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Vifa4g02314 401 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Vifa4g02314 401 Gene3D - 220 308 - -
Vifa4g02314 401 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Vifa4g02314 401 Coils Coil 232 252 - -
Vifa4g02314 401 MobiDBLite consensus disorder prediction 241 258 - -
Vifa4g02314 401 SMART VWA_4 2 175 IPR002035 -
Vifa4g02314 401 CDD VWA_26S_proteasome_subunit 1 188 - -
Vifa4g02314 401 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Vifa4g02314 401 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Vifa4g02314 401 Pfam Ubiquitin interaction motif 326 340 IPR003903 -
Vifa4g02314 401 Pfam Ubiquitin interaction motif 294 309 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02314 Vifa-Chr4 696507061 696511512 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02314 K03029 - gmx:100814594 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02314 4 696507061 696511512 Vifa4g02314 4 696507061 696511512 ECH